Hemiscyllium ocellatum (epaulette shark): 132817078
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Entry
132817078 CDS
T09720
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04622
RIG-I-like receptor signaling pathway
hoc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
132817078 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
132817078 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hoc04054
]
132817078 (ifih1)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132817078 (ifih1)
Pattern recognition receptors [BR:
hoc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132817078 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
Helicase_C
ResIII
DEAD
SWI2_SNF2
CARD
SNF2-rel_dom
NLRC4_HD2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132817078
NCBI-ProteinID:
XP_060683172
LinkDB
All DBs
Position
7:52012658..52136284
Genome browser
AA seq
1037 aa
AA seq
DB search
MSSSEYEQGREQQHLMLIDCFRNRLVAIIQVEPVLDFITFMEEADKEEIRAMKLQKGNQA
AVSLLLTKISRQPPAAGWFGEFFTALREGGCSHAAEYMRLDTDHGISPSLEAQNDLEVKL
IEILAPSLIDKLLPFDISVHCFASGILTQDDVENILSETKQNGNRAGARKLLSRLIMKPP
GWFSTFLETLHKTGHGDLANLLAGNDNSLSETEEPAEESKNVADEQLSTEEQNNVDNAKP
DKIAVEKNEQPPEDLYSCPNTEEENNESSRNSDENSILSEISVLDLSRNAESVHDLAETS
ICSSNDSQLEHGSSGVSGDENANSDSDEESNEKGRQSPVPEIRLRDYQQEVAAPALEGKN
LIICLPTGSGKTRVAVYITRHHLDKMKLQGKTGKVIVLVNKVPLVDQHFRKEFNPYLKHK
YSVSKISGDTQLKISFPQVVRENDIIICTAQILENQLAESNKNDADNLEISDFSLIIIDE
CHHTQKEGVYKSIMTRYIEQKLNNKKGIVQVSLPQILGLTASPGVGGAKNRKNAESHIIQ
ICANLDAYKIMTVKEHYAQLKDQVKDPVKKMEIAEERIKDPFGGQIKEMMTKIHTYLGRE
PTSDFGTQSYEQWIVQKEKSGAKENNRKLRVCAEHLRKYNDALMINDTIRMIDAYNYLTD
FYKDEKRKKVMDDDDDVPKSKLDDTDRYLIGLFNERQEKLQILAGKIENENGKLTKLRTT
ILQEFSRKRNSRGIIFTKTRQNAHALHEWIEENEKFKEFGIKAHYLTGAGNNSQFKHMTQ
NEQKEVLNKFRDGDINLLIATTVAEEGLDIKECNFVIRYGLVTNEIAMVQARGRARSDDS
TYALVANEGSGVLERESVNVYRESMMYAAIQKVQEMPEEEYKKQIVERQWQNIMEHRLKR
RKNLAKIIKSDPSKVTFHCNTCSTLACSGKDIQVIENMHHVNVTDEFKNLYGQRENKALQ
EKCLDYQTNQEIYCKNCGQPWGTMMVHRGVDLPCLSIKNFVVVIDEKNVEKNTYKKWSEV
PFKLPNFDYIRYVESPR
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagctccagcgagtatgagcagggccgagagcagcagcacttgatgctgatcgattgt
ttccgcaaccgcttggtcgcgatcatccaagtggagccagtgctggacttcatcacgttc
atggaagaggccgataaagaggagatccgggccatgaaactgcaaaaaggcaaccaggct
gctgtcagcctgctactcaccaagatcagcaggcagccccctgcagcgggctggtttgga
gagtttttcactgccctgagggaaggcggttgttctcacgccgctgagtatatgcgtctc
gatacagatcacggtatatcgccatcactggaagcccaaaatgacctggaggtgaaactc
atcgagatcttggccccaagtttaatcgacaagctgctaccctttgacatttcagtgcat
tgctttgccagtggcattttgacccaagatgacgtggagaatattttaagtgaaactaaa
caaaatggaaacagagcaggagcccggaaattattgagcagattaattatgaaacctcct
ggttggttctccacatttttggagacactacacaagactggacatggggatcttgcaaac
ttattagccggcaatgataatagcttatctgaaacagaagaaccagcagaagaaagtaaa
aatgtagcagatgaacaattatcaactgaagagcagaataatgtggataatgctaaacca
gacaagatagctgttgaaaaaaatgagcagccaccagaggacttgtatagttgccctaat
acagaagaagaaaacaatgaaagcagcaggaacagtgatgaaaacagcattctatctgag
atttctgttttggatctgtctcggaatgcagaatctgttcatgatttagcagagacaagt
atctgcagttcaaatgatagtcaactagaacatggaagctctggtgtgtctggagatgaa
aacgccaattcagattccgatgaggagagcaatgagaaaggaagacaatcaccggttcct
gagatccgcctccgagactatcagcaagaagttgcagctccagcgctggagggtaaaaat
ctcattatctgcctgcccacaggaagtggaaaaaccagggttgctgtctacattaccaga
catcatctggacaaaatgaagttacagggaaaaacagggaaggtcatagtgcttgttaac
aaggtgcctttagttgatcagcatttccgcaaagagttcaacccatacctgaaacataaa
tatagtgtcagcaaaataagtggtgatacacaactgaagatctccttccctcaagtggtg
cgtgagaatgacattattatctgtacagctcagatcctggagaatcagctggctgaatca
aacaaaaatgatgctgacaatcttgaaatttcagatttttcattgataataattgatgaa
tgccaccacactcagaaagaaggagtgtataagagcataatgaccagatacattgaacaa
aagctgaacaataaaaaaggaattgtacaagtctcacttccacagatcctaggactgaca
gcatcgcctggtgtaggtggcgcaaagaatagaaaaaatgcagaatcgcacattatacaa
atttgtgcaaacctagatgcctacaaaataatgactgttaaggagcattatgcacaactg
aaagaccaagtgaaagatcctgtcaaaaagatggagattgcagaagaaagaataaaagat
ccttttggaggacaaatcaaagaaatgatgacaaaaattcacacataccttggacgagaa
cccacgtcagattttggcacgcagtcttatgagcaatggattgtgcagaaagagaaatca
ggagccaaagagaataatcggaaactacgtgtctgtgcagagcatttaagaaaatacaat
gatgccctgatgattaatgataccataaggatgatcgatgcatacaattatctcacagac
ttctataaagatgagaaaaggaagaaggtcatggatgatgatgacgatgtaccaaagtca
aagctggatgatactgatagatatcttatcggtctttttaatgaacgacaagaaaagctt
cagattcttgctggaaagattgagaatgaaaatggaaaattgacaaaattgcgaacaact
attcttcaagaattctccagaaaacgaaattcaagaggcattatcttcaccaagacacgc
caaaatgcacatgctctgcatgagtggatagaagagaatgagaaatttaaggaatttgga
attaaggctcattacttaactggagctggcaataacagtcagttcaaacacatgacgcag
aacgaacaaaaggaggtgctgaataaattccgtgatggagacatcaacctgctgattgca
actactgtagctgaagaaggtctcgacattaaagaatgtaattttgtaatccgttatggt
ctagtcaccaatgagattgctatggttcaggctcgcggaagggcacggtctgatgatagc
acttatgccttggtagcaaacgaggggtcaggagttcttgaacgcgagagtgtgaatgtt
tatcgtgagtcaatgatgtatgcagcaattcaaaaagtgcaggaaatgccagaagaggaa
tacaaaaaacagatagtagaaaggcagtggcagaacatcatggaacacagattgaaaagg
aggaagaatttggcaaaaataataaaaagtgatccttccaaagtgaccttccactgtaat
acctgcagcacgcttgcttgttcaggaaaagatattcaagtcatcgaaaacatgcatcat
gtcaatgtcacagatgagttcaaaaatttatatggtcaacgagaaaataaagctttgcaa
gagaaatgtctggattaccaaacaaatcaagagatctactgcaagaactgtggccagcca
tggggtacaatgatggtccatcgtggagtcgacttaccatgcttgtcaatcaaaaatttt
gttgtggttattgatgagaagaacgttgaaaaaaacacttataaaaaatggagcgaagtt
cccttcaaactgcctaatttcgactacatcagatatgttgaaagtcccagataa
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