Hemiscyllium ocellatum (epaulette shark): 132817237
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Entry
132817237 CDS
T09720
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hoc04147
]
132817237 (col18a1a)
00535 Proteoglycans [BR:
hoc00535
]
132817237 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132817237 (col18a1a)
Exosome [BR:
hoc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132817237 (col18a1a)
Proteoglycans [BR:
hoc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
132817237 (col18a1a)
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132817237 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
SCP2
Motif
Other DBs
NCBI-GeneID:
132817237
NCBI-ProteinID:
XP_060683561
LinkDB
All DBs
Position
7:99083801..99391744
Genome browser
AA seq
1585 aa
AA seq
DB search
MSTAAKLVLLCLIWGALPQARCWLNWFGAKKPTTTVPTITTRQVTSTFKGHPPRPQHGAD
ITGTTPLTNEQWVGKPEGEEVTTQLGDAHVGPGGSNPVTGALNATEGAWDGALNSTVQAG
TPLAGSTLAAGEASGTATPAPALTEADTPPGPTATGGGQTERLGTAVGPVGRALTTEEAS
SLASSSSESSSPSLNASLSYTISPSALATPHRPDSDSISVTTAAPSSKPSCGPHCPGNER
SVSLLQLLGDPAPKQVTVEYGPDQNPVYEFGPNVNTGQLARAYFKSPFFRDFSLLFTIKP
TSPKSGVLFAITDASQTVIYVGVKLSEVQAGTQNVVFYYTEPGSQQTNEAAHFRVKSLTN
KWVKIALAVEGDVVAFYLDCELQGSVSFERSPDEMEIDPSSGVFVALAGGADPDNFLGFI
SDLKVKGDPWAARLYCDEDDDGEASGDYGSGYGRGTQTVTPPTHHLPEHTPVRPPPLTIE
RQHTRPAEEGSRRIQVSGADRGSVGEKVYSGPKGESGAGFGTVIKGEKGDKGDPGEKGTA
GFGYRGPKGEKGSPGIQGPPGPPGSAATTVRERGDGVAVERVVGVEGPPGPQGPPGPPGR
DGEPGDPGEDGKRGEVGPQGFPGTPGDHGAKGDKGDPGIGSPGPPGPPGPPGPPCLPGPP
AVITKMDKLTFLDMEGSGFDGNLEMLRGLPGPPGPPGLPGLPGRPGVFGMNGTAIAGPPG
LPGPPGADGRPGISGPMGPPGPPGQDGRPGLPGERGLQGEPGDLGLPGAQGPKGSAGQAG
PPGQPGLAGLPGPVGPRGPPGPPGPSAAVLRAGFEDAEGSALPIVTGMPGERGLEGAQGV
PGVPGLPGVPGLKGEPGIPGEVGLQGPQGYPGEIGLTGPPGPQGPKGAQGDPGMKGEPGR
DGVGLPGPPGPPGITYSGGSAVDGVTFVPGAQGPRGIPGQAGLPGPSGPKGERGPPGITG
PTGPKGDRGEPGFIISPDGTTLNSLLASGIGSKGDAGIPGPIGPQGLPGYPGQKGEIGLP
GRPGRPGINGLKGEKGEPGDFSGGFGYRNIPGPPGPPGPPGPPGMPASDHVFRGAAEGFT
GIHGPQGPKGDRGNPGYMGPPGQKGDTGDPGLPGPPGTIPREVYDFTSSLRGAKGEMGDV
GQKGEKGAPGDGYGSGVAGPQGPPGPPGPPGLQGPKGDSIVGPRGLPGNAGPPGYGYPGA
PGPPGPPGPPGVSASGHHRTSIVGPPGPPGPPGSAASASGVTVLQTYQTMLSISRSLQEG
TLAYVMERGDLYIRVRDGWRQVYLGEYIPYHSTGINGNNVEAVGSPPVVQYSTDSESAQT
VEGAAPDSGAPEPRTESPWGPEHRRPVHHRPETPPLNYPRHQQPQSVPRWLTTSAPSRSA
VPPRHSHHGLSHRPHVPPSDHAESLHGVPMLHLMALNTPLTGNMQGIRGVDFQCFQQARG
VGLMGTFRGFLSSKLQDLYSVVRRADRHSVPVVNSKGQVLFDSWSSLFSGSQARIKPNTP
IYSFDGRDVLQDHAWPEKFIWHGSDSRGRRLSQSYCEAWREAQDNKVGMASSLLSGQLLE
QRPSPCSHSYIILCIENSYLPHTRK
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagcagcaaagcttgtgctgctctgcctgatctggggagctctcccccaggcc
cgctgctggttaaactggttcggggccaagaagccgaccacgacggtgcccaccatcacc
acgcgacaggtcacctccaccttcaaggggcacccgcccagaccccagcacggagcggac
atcacagggaccactccgctcaccaacgagcagtgggtgggcaagccggagggagaggaa
gtgaccactcagctcggcgatgcccacgtggggccaggggggagcaaccctgtcacaggg
gcactcaacgcgacggagggtgcctgggacggcgcgttgaattccacggtccaagcgggg
acgccgctcgcagggtccaccctggcggcgggagaagcttccggaacggcgaccccggct
ccagccctcactgaggctgacacaccaccggggcctactgcgaccggcggaggtcagacg
gagcgtttggggacagctgtcgggcctgtaggtcgggccttgaccacagaggaggcatcg
tcattggcgtcgtcttcctcggaatcctcctctccttcgctcaatgcctccctgtcctac
accatctcgccctccgccctggcgactcctcaccgcccggactcggactcaatcagcgtt
accacggccgccccctcctccaagccgtcctgtggcccccactgtccaggtaatgagcgt
tccgtgtctttgctgcagttgctgggagaccccgctcctaagcaggtcactgtggagtat
ggacctgaccaaaacccagtgtacgagttcggcccaaatgtcaacaccgggcagttggca
agagcttacttcaaaagccccttcttccgtgacttctccttgctcttcacaatcaagcca
acgtcacctaagagcggcgtgctctttgctatcaccgacgccagtcaaactgtcatctac
gtgggagtgaagttgtccgaggtgcaggctggaacacagaacgttgtgttctattatacg
gagcctggctcccagcagactaacgaggccgcacacttcagggtgaagagtttaaccaac
aaatgggtcaagattgcccttgctgtggagggcgatgtcgtcgccttctacctggactgt
gagctgcaaggatctgtgtcctttgaaaggtccccagacgagatggagattgatccgtct
tctggggtctttgttgcgctggcaggcggtgcagatcctgataacttcttgggtttcatc
tcggatctgaaggtaaagggagacccttgggcagcacgtctttactgtgatgaggatgac
gatggcgaggcttcgggagattatgggagtggatacggaagaggaactcaaacggtgaca
cctcctacgcatcatctcccagaacacacaccagtgcggccccctcccctcactatcgaa
cgacagcataccagaccagctgaggaggggagcagacggatacaagtctcaggagcagac
agaggctcagtgggagagaaggtttacagtgggccgaaaggagagagtggagctggtttc
ggtacagtcatcaaaggagagaagggtgacaaaggggatccgggtgaaaagggcaccgcc
ggattcgggtaccgcggtccgaaaggagagaaaggatcccccgggatccagggcccgccg
ggtcctccaggatccgccgctaccacagtgcgggaacgtggtgacggagtggcggtggag
cgtgtggtcggtgtggaaggacctcccggaccgcagggacctcccggaccccccgggaga
gacggagagccgggggatcctggcgaagacggcaagaggggtgaggtcggccctcaaggt
ttcccagggaccccgggtgatcacggagcgaaaggcgataagggtgacccagggattgga
tccccaggaccccctggacctccaggaccccctggaccaccttgtttgcccggcccacca
gctgtaatcaccaagatggacaaactaacgtttcttgatatggaaggttctggattcgac
ggcaacctggaaatgttgcggggattgcccggacctccggggccacctggactccctggt
cttcccggacggcctggagtgtttggtatgaacggcactgcgattgctggaccgccgggt
ctgcccggacccccaggggcagacgggaggcctgggatctctgggccaatgggacctcca
gggccacctggacaagatggccgaccgggactgcctggggagagaggactgcagggcgag
cctggtgacttgggcctcccgggagctcaggggcctaagggatcggcgggacaggccggg
cctcccggtcagcctggcctagctgggttgccagggcctgtcggaccccgaggaccaccc
ggtcctcctggaccatcggcagcagttctccgcgctggctttgaggacgcagaaggatct
gcccttccgatcgtgaccggaatgcctggggaacgggggctggaaggtgcccagggggtc
cccggggtacccggtcttcctggagtgcctggtttgaagggtgagccaggaatcccagga
gaggtgggattgcagggaccgcaaggatatcctggagaaatcgggttaactggaccacct
ggccctcagggaccgaagggcgcccagggagatccaggcatgaagggtgagccgggcaga
gatggagtcggattgccagggcctcctggtcctcctggaatcacctacagcggtggcagt
gcagtcgatggtgttacatttgtgcccggtgcacagggcccaaggggcattcccggccaa
gctggattgccgggtcccagtggaccgaaaggtgaacgaggacccccaggtatcacggga
cccacagggccaaagggtgataggggagagcctggcttcatcattagccccgatggaacc
acattgaatagtctgctggccagtggcattggatcaaagggtgatgctggcattccagga
cccattggcccccagggcttgccgggatacccaggtcaaaaaggtgaaattggattgcca
gggagaccgggtcggcctggcataaatggactgaaaggtgaaaagggcgagccaggagat
ttcagtggtggttttgggtaccggaatattccaggaccacccggtcctccaggaccccct
ggaccacctggtatgccagcgtctgatcacgtgttcagaggagcagctgaaggattcact
ggaatacatggaccacaaggccctaaaggagaccgtggcaacccagggtatatgggccct
ccaggacagaaaggggatactggggaccctgggcttcctggccctccaggaaccatccca
cgtgaggtatatgacttcacctcgtctctcagaggtgcaaaaggagaaatgggtgacgtg
gggcagaaaggagagaagggcgcaccaggagatggctatggttccggtgtagccgggccc
cagggtcctcctgggcctccgggaccaccgggtcttcagggaccgaaaggagacagcatt
gttggacctagagggttaccaggcaacgcgggaccccctggttatgggtatccaggtgcc
cctggtcctcctgggcctcccggtcccccaggagtttctgcttcaggacaccacagaaca
agcatcgtcggaccaccaggaccccctggtccccctggctctgcagcctcagcttctggg
gttacagtgctgcagacctatcagaccatgctgagtatctctcgcagcctgcaggaggga
acattggcttatgtcatggagcgtggagacttgtatatccgagtccgcgacggctggcgt
caggtttatctcggggaatacattccataccacagtactggaataaatgggaacaacgtg
gaagcggtgggctctccgcccgtggtgcagtactcgacagacagtgaatccgcgcagacc
gtggagggggcagccccagacagcggggctcctgagccccgcacggagagtccctggggc
cccgagcaccgtcggcccgtgcaccatcgtccggagacgccgccactcaactacccgcgc
caccagcaaccccagtcggtcccaagatggctgaccacctctgctccgtcccgctcagca
gttcctccaaggcacagccaccacggcctctcccatcgaccccatgtgcccccctctgac
cacgctgagagcctccacggagtaccaatgcttcacctcatggctctcaacacccctctc
accggcaacatgcaggggatccggggggtcgacttccaatgtttccagcaggcccggggg
gtggggctgatggggacgttcagaggcttcctctcatctaagctccaggacctgtacagc
gtggtgcggcgggctgacagacactcggtgcccgtcgtaaacagtaaggggcaggtgctg
tttgatagttggagctcgctcttctctgggtctcaggctcgtatcaaacccaacaccccc
atctactcctttgacggcagagatgtgcttcaagaccatgcctggcctgagaagttcatc
tggcatggatcggattccaggggccggcgcctgtcacagagttactgtgaagcctggagg
gaagcccaggacaacaaagtgggaatggcgtcgtccctgctgagcggccaactcctcgaa
cagaggcctagcccctgctcccattcctacattatcttgtgcatcgagaacagctacctg
cctcacacccgaaagtaa
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