| Entry |
|
|---|
| Symbol |
col18a1a
|
|---|
| Name |
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
|
|---|
| KO |
| K06823 | collagen type XVIII alpha |
|
|---|
| Organism |
hoc Hemiscyllium ocellatum (epaulette shark)
|
|---|
| Brite |
KEGG Orthology (KO) [BR:hoc00001]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:hoc04147]
132817237 (col18a1a)
00535 Proteoglycans [BR:hoc00535]
132817237 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:hoc00536]
132817237 (col18a1a)
Exosome [BR:hoc04147]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132817237 (col18a1a)
Proteoglycans [BR:hoc00535]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
132817237 (col18a1a)
Glycosaminoglycan binding proteins [BR:hoc00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
132817237 (col18a1a)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
7:99083801..99391744
|
|---|
| AA seq |
1585 aa
MSTAAKLVLLCLIWGALPQARCWLNWFGAKKPTTTVPTITTRQVTSTFKGHPPRPQHGAD
ITGTTPLTNEQWVGKPEGEEVTTQLGDAHVGPGGSNPVTGALNATEGAWDGALNSTVQAG
TPLAGSTLAAGEASGTATPAPALTEADTPPGPTATGGGQTERLGTAVGPVGRALTTEEAS
SLASSSSESSSPSLNASLSYTISPSALATPHRPDSDSISVTTAAPSSKPSCGPHCPGNER
SVSLLQLLGDPAPKQVTVEYGPDQNPVYEFGPNVNTGQLARAYFKSPFFRDFSLLFTIKP
TSPKSGVLFAITDASQTVIYVGVKLSEVQAGTQNVVFYYTEPGSQQTNEAAHFRVKSLTN
KWVKIALAVEGDVVAFYLDCELQGSVSFERSPDEMEIDPSSGVFVALAGGADPDNFLGFI
SDLKVKGDPWAARLYCDEDDDGEASGDYGSGYGRGTQTVTPPTHHLPEHTPVRPPPLTIE
RQHTRPAEEGSRRIQVSGADRGSVGEKVYSGPKGESGAGFGTVIKGEKGDKGDPGEKGTA
GFGYRGPKGEKGSPGIQGPPGPPGSAATTVRERGDGVAVERVVGVEGPPGPQGPPGPPGR
DGEPGDPGEDGKRGEVGPQGFPGTPGDHGAKGDKGDPGIGSPGPPGPPGPPGPPCLPGPP
AVITKMDKLTFLDMEGSGFDGNLEMLRGLPGPPGPPGLPGLPGRPGVFGMNGTAIAGPPG
LPGPPGADGRPGISGPMGPPGPPGQDGRPGLPGERGLQGEPGDLGLPGAQGPKGSAGQAG
PPGQPGLAGLPGPVGPRGPPGPPGPSAAVLRAGFEDAEGSALPIVTGMPGERGLEGAQGV
PGVPGLPGVPGLKGEPGIPGEVGLQGPQGYPGEIGLTGPPGPQGPKGAQGDPGMKGEPGR
DGVGLPGPPGPPGITYSGGSAVDGVTFVPGAQGPRGIPGQAGLPGPSGPKGERGPPGITG
PTGPKGDRGEPGFIISPDGTTLNSLLASGIGSKGDAGIPGPIGPQGLPGYPGQKGEIGLP
GRPGRPGINGLKGEKGEPGDFSGGFGYRNIPGPPGPPGPPGPPGMPASDHVFRGAAEGFT
GIHGPQGPKGDRGNPGYMGPPGQKGDTGDPGLPGPPGTIPREVYDFTSSLRGAKGEMGDV
GQKGEKGAPGDGYGSGVAGPQGPPGPPGPPGLQGPKGDSIVGPRGLPGNAGPPGYGYPGA
PGPPGPPGPPGVSASGHHRTSIVGPPGPPGPPGSAASASGVTVLQTYQTMLSISRSLQEG
TLAYVMERGDLYIRVRDGWRQVYLGEYIPYHSTGINGNNVEAVGSPPVVQYSTDSESAQT
VEGAAPDSGAPEPRTESPWGPEHRRPVHHRPETPPLNYPRHQQPQSVPRWLTTSAPSRSA
VPPRHSHHGLSHRPHVPPSDHAESLHGVPMLHLMALNTPLTGNMQGIRGVDFQCFQQARG
VGLMGTFRGFLSSKLQDLYSVVRRADRHSVPVVNSKGQVLFDSWSSLFSGSQARIKPNTP
IYSFDGRDVLQDHAWPEKFIWHGSDSRGRRLSQSYCEAWREAQDNKVGMASSLLSGQLLE
QRPSPCSHSYIILCIENSYLPHTRK |
|---|
| NT seq |
4758 nt +upstreamnt +downstreamnt
atgagtacagcagcaaagcttgtgctgctctgcctgatctggggagctctcccccaggcc
cgctgctggttaaactggttcggggccaagaagccgaccacgacggtgcccaccatcacc
acgcgacaggtcacctccaccttcaaggggcacccgcccagaccccagcacggagcggac
atcacagggaccactccgctcaccaacgagcagtgggtgggcaagccggagggagaggaa
gtgaccactcagctcggcgatgcccacgtggggccaggggggagcaaccctgtcacaggg
gcactcaacgcgacggagggtgcctgggacggcgcgttgaattccacggtccaagcgggg
acgccgctcgcagggtccaccctggcggcgggagaagcttccggaacggcgaccccggct
ccagccctcactgaggctgacacaccaccggggcctactgcgaccggcggaggtcagacg
gagcgtttggggacagctgtcgggcctgtaggtcgggccttgaccacagaggaggcatcg
tcattggcgtcgtcttcctcggaatcctcctctccttcgctcaatgcctccctgtcctac
accatctcgccctccgccctggcgactcctcaccgcccggactcggactcaatcagcgtt
accacggccgccccctcctccaagccgtcctgtggcccccactgtccaggtaatgagcgt
tccgtgtctttgctgcagttgctgggagaccccgctcctaagcaggtcactgtggagtat
ggacctgaccaaaacccagtgtacgagttcggcccaaatgtcaacaccgggcagttggca
agagcttacttcaaaagccccttcttccgtgacttctccttgctcttcacaatcaagcca
acgtcacctaagagcggcgtgctctttgctatcaccgacgccagtcaaactgtcatctac
gtgggagtgaagttgtccgaggtgcaggctggaacacagaacgttgtgttctattatacg
gagcctggctcccagcagactaacgaggccgcacacttcagggtgaagagtttaaccaac
aaatgggtcaagattgcccttgctgtggagggcgatgtcgtcgccttctacctggactgt
gagctgcaaggatctgtgtcctttgaaaggtccccagacgagatggagattgatccgtct
tctggggtctttgttgcgctggcaggcggtgcagatcctgataacttcttgggtttcatc
tcggatctgaaggtaaagggagacccttgggcagcacgtctttactgtgatgaggatgac
gatggcgaggcttcgggagattatgggagtggatacggaagaggaactcaaacggtgaca
cctcctacgcatcatctcccagaacacacaccagtgcggccccctcccctcactatcgaa
cgacagcataccagaccagctgaggaggggagcagacggatacaagtctcaggagcagac
agaggctcagtgggagagaaggtttacagtgggccgaaaggagagagtggagctggtttc
ggtacagtcatcaaaggagagaagggtgacaaaggggatccgggtgaaaagggcaccgcc
ggattcgggtaccgcggtccgaaaggagagaaaggatcccccgggatccagggcccgccg
ggtcctccaggatccgccgctaccacagtgcgggaacgtggtgacggagtggcggtggag
cgtgtggtcggtgtggaaggacctcccggaccgcagggacctcccggaccccccgggaga
gacggagagccgggggatcctggcgaagacggcaagaggggtgaggtcggccctcaaggt
ttcccagggaccccgggtgatcacggagcgaaaggcgataagggtgacccagggattgga
tccccaggaccccctggacctccaggaccccctggaccaccttgtttgcccggcccacca
gctgtaatcaccaagatggacaaactaacgtttcttgatatggaaggttctggattcgac
ggcaacctggaaatgttgcggggattgcccggacctccggggccacctggactccctggt
cttcccggacggcctggagtgtttggtatgaacggcactgcgattgctggaccgccgggt
ctgcccggacccccaggggcagacgggaggcctgggatctctgggccaatgggacctcca
gggccacctggacaagatggccgaccgggactgcctggggagagaggactgcagggcgag
cctggtgacttgggcctcccgggagctcaggggcctaagggatcggcgggacaggccggg
cctcccggtcagcctggcctagctgggttgccagggcctgtcggaccccgaggaccaccc
ggtcctcctggaccatcggcagcagttctccgcgctggctttgaggacgcagaaggatct
gcccttccgatcgtgaccggaatgcctggggaacgggggctggaaggtgcccagggggtc
cccggggtacccggtcttcctggagtgcctggtttgaagggtgagccaggaatcccagga
gaggtgggattgcagggaccgcaaggatatcctggagaaatcgggttaactggaccacct
ggccctcagggaccgaagggcgcccagggagatccaggcatgaagggtgagccgggcaga
gatggagtcggattgccagggcctcctggtcctcctggaatcacctacagcggtggcagt
gcagtcgatggtgttacatttgtgcccggtgcacagggcccaaggggcattcccggccaa
gctggattgccgggtcccagtggaccgaaaggtgaacgaggacccccaggtatcacggga
cccacagggccaaagggtgataggggagagcctggcttcatcattagccccgatggaacc
acattgaatagtctgctggccagtggcattggatcaaagggtgatgctggcattccagga
cccattggcccccagggcttgccgggatacccaggtcaaaaaggtgaaattggattgcca
gggagaccgggtcggcctggcataaatggactgaaaggtgaaaagggcgagccaggagat
ttcagtggtggttttgggtaccggaatattccaggaccacccggtcctccaggaccccct
ggaccacctggtatgccagcgtctgatcacgtgttcagaggagcagctgaaggattcact
ggaatacatggaccacaaggccctaaaggagaccgtggcaacccagggtatatgggccct
ccaggacagaaaggggatactggggaccctgggcttcctggccctccaggaaccatccca
cgtgaggtatatgacttcacctcgtctctcagaggtgcaaaaggagaaatgggtgacgtg
gggcagaaaggagagaagggcgcaccaggagatggctatggttccggtgtagccgggccc
cagggtcctcctgggcctccgggaccaccgggtcttcagggaccgaaaggagacagcatt
gttggacctagagggttaccaggcaacgcgggaccccctggttatgggtatccaggtgcc
cctggtcctcctgggcctcccggtcccccaggagtttctgcttcaggacaccacagaaca
agcatcgtcggaccaccaggaccccctggtccccctggctctgcagcctcagcttctggg
gttacagtgctgcagacctatcagaccatgctgagtatctctcgcagcctgcaggaggga
acattggcttatgtcatggagcgtggagacttgtatatccgagtccgcgacggctggcgt
caggtttatctcggggaatacattccataccacagtactggaataaatgggaacaacgtg
gaagcggtgggctctccgcccgtggtgcagtactcgacagacagtgaatccgcgcagacc
gtggagggggcagccccagacagcggggctcctgagccccgcacggagagtccctggggc
cccgagcaccgtcggcccgtgcaccatcgtccggagacgccgccactcaactacccgcgc
caccagcaaccccagtcggtcccaagatggctgaccacctctgctccgtcccgctcagca
gttcctccaaggcacagccaccacggcctctcccatcgaccccatgtgcccccctctgac
cacgctgagagcctccacggagtaccaatgcttcacctcatggctctcaacacccctctc
accggcaacatgcaggggatccggggggtcgacttccaatgtttccagcaggcccggggg
gtggggctgatggggacgttcagaggcttcctctcatctaagctccaggacctgtacagc
gtggtgcggcgggctgacagacactcggtgcccgtcgtaaacagtaaggggcaggtgctg
tttgatagttggagctcgctcttctctgggtctcaggctcgtatcaaacccaacaccccc
atctactcctttgacggcagagatgtgcttcaagaccatgcctggcctgagaagttcatc
tggcatggatcggattccaggggccggcgcctgtcacagagttactgtgaagcctggagg
gaagcccaggacaacaaagtgggaatggcgtcgtccctgctgagcggccaactcctcgaa
cagaggcctagcccctgctcccattcctacattatcttgtgcatcgagaacagctacctg
cctcacacccgaaagtaa |
|---|
