Hemiscyllium ocellatum (epaulette shark): 132818356
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Entry
132818356 CDS
T09720
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hoc03041
]
132818356 (prpf39)
Spliceosome [BR:
hoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
132818356 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
Mad3_BUB1_I
TPR_15
SlyX
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
132818356
NCBI-ProteinID:
XP_060685284
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All DBs
Position
8:complement(84852738..84920764)
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AA seq
712 aa
AA seq
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MEARDSNQRLPPQNDGLKSADECDFHKSISSTADSLSHELLNPNMESADETINLKSSGVI
CEDEVDQRTSLKPFTDLSEISVAQVESPEGSASMDTESQPENSPPEGTVEEIENIELNDS
GVPFPTEYEKFWKVVEDNPQDFTGWTYLLQYVEQENHILAARKAFDHFLSHYPYCYGYWK
KYADLERRHDNVKRAEEVYRRGLQAIPLSVDLWLHYINFLKETLDSNCPEIDDQIKSVFE
HAVLAAGTDFRSDRLWETYINWENDRGNLAEVTAIYDRILGIPTQLYSHHFQRFKDHVQN
HLPKNIISSEDFIKLRQELASTNEHFDNVTLGNDLTAGIDINDPAQIVSEIENMRHRIIE
VRQEIYNHNENEVSRRWAFEEGIKRPYFHVKPLEKIQLKNWKDYLDFEIENGTLERVVVL
FERCLVACALYEDFWIKYAKYMENHSSEAVRHVYSRACTVHLSKKPMVHLLWAAFEEQQG
NINEARRILKMLEESVPGLAMVRLRRVSLERRHGNMDEAEFLLQDAIKNSKTPNEASFYA
VKLARLLVKVEKSLPKARKVLLEAIDFDKESTKLYLNLLELEYNSDLKLNEENILNAFDK
AISSSMAIETRIAFSQRKVEFLEDFGSDVKRLMVAYDDHQQLLKEQESSKRKAENGSEEP
EEKKQRSDATLASAQLMSGDLQANQSAYNYNAWYQYNYAAPWNYGQYYPPPT
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgcgagactctaatcagagactgccaccacagaatgatggacttaagtctgca
gatgaatgcgattttcataaaagtatttcgtctactgctgattccctttcacatgagctg
ctcaatccaaacatggagtctgctgatgaaaccatcaatttgaaatcaagcggtgtgatt
tgtgaggatgaagttgatcagagaaccagtttgaagccttttacagatttgtcagaaata
tctgtggctcaagttgaatctcctgaaggatccgcatcaatggacactgaatctcaacct
gagaattccccacctgaaggaacagtagaagagatagaaaatatagaactgaatgattca
ggggtcccctttcctacagagtatgaaaagttttggaaagtggttgaagacaatccccag
gacttcactggttggacatacttgttgcaatatgtagaacaagagaatcatatccttgca
gctagaaaagctttcgatcacttcttgtcccactatccatactgttatggctattggaaa
aaatatgctgatcttgagcggcgacatgacaatgtgaaacgggcagaagaggtataccga
cgaggtcttcaagcaataccacttagcgttgatctttggcttcactatatcaatttctta
aaagagaccttggacagcaactgtccagagattgatgaccaaataaaaagtgtatttgaa
catgctgtgttagctgcagggactgactttcgctcagacagactttgggaaacttacatc
aactgggaaaatgaccggggaaatctggcagaagtgactgcaatttatgatcggattctt
ggtattccaacgcagctttacagtcatcacttccaaaggttcaaagatcatgttcagaat
cacttgcctaaaaatataatctcttcagaggattttattaaactacgtcaagagctggca
tccacaaatgaacattttgataatgttactctgggaaatgatctaacagctggaattgat
ataaatgatcctgctcagattgtctctgaaatagaaaatatgcgtcatagaataattgaa
gttcgtcaggaaatatataatcataatgagaatgaagttagcagacgatgggcttttgaa
gaagggattaaacggccttactttcatgtaaaaccattggaaaaaatacagctaaaaaac
tggaaagattatcttgactttgagatagaaaatggaactcttgaacgtgtggtggttttg
tttgaaaggtgtcttgttgcttgtgccctttatgaagacttctggataaagtatgctaaa
tacatggaaaaccacagtagtgaagctgtgcgacatgtctacagcagagcatgtacagtt
catctatcaaagaaacccatggtacatttactttgggcagcttttgaggaacagcaagga
aacattaatgaagctagaagaatcttgaaaatgctagaagaatctgtaccagggttagct
atggtccgcttgagacgagtgagcttagaacgtcgccatgggaatatggatgaagcagaa
tttctgctacaggatgcaattaaaaacagcaaaacacctaacgaagcatctttctatgct
gtgaagttggctcgtcttttagtcaaagtagagaaaagtcttcctaaggccagaaaggtc
ctattggaagcaatagactttgataaggaaagtaccaaactctatctaaatcttttggaa
cttgaatacaattcagatctcaaactgaatgaggaaaacattctgaatgcttttgataaa
gcaataagtagctcaatggctatagaaacgagaatagccttctctcagcgaaaagttgag
tttttggaagattttggctctgatgtaaaaagactcatggtggcttatgatgatcatcaa
cagcttttaaaagagcaagagtcatctaaaagaaaggcagaaaatgggtcagaagagcca
gaggagaaaaagcaaaggagtgatgcaacattagcatctgcccagctgatgagtggggac
ttacaggctaatcagtctgcatataattacaatgcttggtatcagtacaattatgcagca
ccctggaactatgggcagtattacccaccacctacataa
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