Hemiscyllium ocellatum (epaulette shark): 132819480
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Entry
132819480 CDS
T09720
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04120
Ubiquitin mediated proteolysis
hoc04137
Mitophagy - animal
hoc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132819480 (prkn)
04120 Ubiquitin mediated proteolysis
132819480 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
132819480 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hoc04131
]
132819480 (prkn)
04121 Ubiquitin system [BR:
hoc04121
]
132819480 (prkn)
03029 Mitochondrial biogenesis [BR:
hoc03029
]
132819480 (prkn)
Enzymes [BR:
hoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
132819480 (prkn)
Membrane trafficking [BR:
hoc04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
132819480 (prkn)
Aggrephagy
Other aggrephagy associated proteins
132819480 (prkn)
Xenophagy
Other xenophagy associated proteins
132819480 (prkn)
Ubiquitin system [BR:
hoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
132819480 (prkn)
Mitochondrial biogenesis [BR:
hoc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
132819480 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
132819480
NCBI-ProteinID:
XP_060686996
LinkDB
All DBs
Position
10:complement(82059060..83190310)
Genome browser
AA seq
462 aa
AA seq
DB search
MIVFVRFNLSHGFPVEVDANARILQLKEAVAKRQGVPFDQLCVIFAGKELRNDLTLQSCG
LIQQSTVHVVQTTSQLTQNPPTDTTTGILGKRNGGKADILNQMDLSASVFPSHPMNLKAV
LGNGGQGHLSCYESSGSRPYNRFYVYCKATCKAVQPGKLRVRCSTCQQGTLTLTRDPSCW
EDVLERSRMKGVCQTEDCNGTVAEFYFKCGKHPTSESDTSVILNLITPNRQNIPCITCTE
TVDPVLIFPCVDRHVICLDCFHLYCVTRLNDRQFIHDPELGYSLPCVAGCPDSLIKEVHH
FRILGNDKYDRYQRYAAEECVLQMGGVLCPRPDCGAGLLPDAGLRRIECLQQNGVGCGFI
FCRECKEEYHEEECSGLCMTECTVTQQDCVINQQAAQQALWDKASRQAIKETTKPCPKCQ
VPVEKNGGCMHMKCPRPSCHFEWCWLCSKEWNRDCMGDHWFE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgttaggttcaatttgagccatggattcccggtggaggttgatgcaaat
gccaggatcttgcagcttaaggaggctgttgctaagagacaaggagttccatttgaccag
ttgtgcgttatctttgctggaaaggagctgaggaatgacttgacactgcagagttgtggc
ctgatccagcaaagtactgttcatgtggtccaaaccacttctcaactaactcaaaatcca
cctactgatacaaccactggcattctggggaaaagaaatggaggtaaagcggacatctta
aatcagatggatctcagtgcatctgtctttccaagtcatcctatgaatctcaaagctgtc
cttggaaatggaggtcagggtcatcttagctgctatgaatcttcaggttcaagaccttac
aacagattttatgtctattgcaaggcaacatgcaaagcagtgcagcctgggaaactaagg
gtgcggtgtagcacgtgtcagcaaggaacattgactttaaccagggacccatcttgctgg
gaggatgttttggaaaggagtaggatgaaaggtgtgtgtcaaacagaagactgcaatgga
actgttgcagagttttacttcaaatgtggaaaacatccaacctctgagagtgacacatct
gtgattttgaacttaattactccaaacagacaaaacatcccatgtataacctgtactgaa
actgttgatccagtgttgatatttccttgtgtggatcgacatgtcatatgcttggattgt
ttccatctatattgcgtgacacggctgaatgaccggcaatttatccatgacccagaactt
ggatattccctcccctgtgtggctggctgcccagactcactgattaaagaagtgcatcac
ttcagaattcttgggaatgacaagtatgatcgttatcagcgctacgctgcagaggaatgt
gtgctgcagatgggtggggttttgtgcccaagaccagattgtggagctggactgcttcct
gatgcaggtctacgtaggattgagtgtctgcaacaaaatggagtaggttgtgggtttata
ttttgccgtgagtgcaaggaagagtatcatgaggaggagtgcagtggcctttgtatgaca
gaatgcactgtgacccaacaggattgtgttatcaatcaacaggctgcacaacaagctctc
tgggacaaggcctcaagacaggcaatcaaggaaacaactaaaccttgtcccaaatgccaa
gtaccagtggagaagaatggaggctgcatgcacatgaaatgccccaggccttcttgccac
tttgaatggtgctggttgtgcagcaaggagtggaatcgtgactgcatgggagatcactgg
ttcgagtga
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