Hemiscyllium ocellatum (epaulette shark): 132819703
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Entry
132819703 CDS
T09720
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132819703 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132819703 (msh6)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132819703 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
132819703
NCBI-ProteinID:
XP_060687350
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All DBs
Position
10:complement(29458731..29476057)
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AA seq
1377 aa
AA seq
DB search
MSRQSTLFSFFPKSPPLSASSSAAAKASPEASCPSAKVKAQTSPRENGSGARPAKRCRAA
AASPKASPLFAGGERKAGKKQAAPGPPALGQACEFAPGDLVWAKLEGYPWWPSLVYNHPT
AEEYLRGKGKSLRIHVQFFDDPPTRGWVSVKYVRLYTGPGCKEAQRGGIYFSGKPEIRRA
VELADAAFPKSREKRLELAVCTENSEPEEEEEEEEEEMEVTDQSAASEEDKENNSEDEKV
KGQRSRTTRSASTKAKRRRLVVESDSDAESSEEEFRPEQHDGSSEECSSGVDERELSEPD
PETDPDSPVKTPFKRKRGGTARKKSASSSPSELPKRAATGAVSSSTKSRLSAFSAPETFE
CQSNSGGAGSPSPATTWDHEKLEWFKPGKRKDAKRRKEGDPEYDPSTLYVPDDFLSRCTP
GMRRWWELKSQMFDTVIFYKVGKFYELYHVDAVTGVTELGLSFMKGSWAHSGFPEIAFGR
FSDALVQKGYKVARVEQTETPEMMEARCKSLHHPTKFDRVVRREVCRVITKGTQTYSVLD
GSAAESCSKYLLCLKEAAASTEPAGQACSYGVCFVDTSVGKFHVGQFVDDRHCSRLRTLL
AHHPPVQVLFERGNPSAETRKILKGCLGSALQEGLQPASQFWDASKTLRVLAEEGYFSEV
REQGVPLPDALRLMVSETDSLGLTPGEGYDLALSALGACVFYLKRCLIDQELLSMANFEE
YTPVDVSADRAKGSPTRPAVGRQRLVLDGVTLTNLELLQNATTGTREGTLLEQLDHCCTY
FGKRLLKQWLCAPLCQPLAIEDRLSAIEDLMAVPSTVAELVELLKKVPDLERLLSRIHSI
GSPLKSKDHPDSRAVFYEETSYSKKKIADFLSSLEGFKVFQEILQVVEPSLNAFRSRLLR
QIVNLKGSTAEGLFPDLSAELKRWDTAFDHQKARNTGVITPKAGFDPDYDQALADIKQTE
RELQEYLEAQRVRLCCRSMVYWGSGRNRYQLEVPEHIADRRVPEDYELKSTKKGYKRYWT
KSIEKLLETMNNAEERRDSALQDCMRRLFYNFDKNYKSWQAAVDCMAVLDVLLSLTHYSQ
SGDGPMCRPVVMLAEDDTRPFLELRASRHPCVLKTFFGDFIPNDVFIGCTDVEDLDGGPS
NNQASCLLVTGPNMGGKSTLMRQVGLLVILAQLGCYVPAESCKFNPVDRVFTRLGASDRI
MSGESTFFVELSETSSILQHATSHSLVLLDELGRGTATYDGTAIASAVVKELAENIKCRT
LFSTHYHSLVEDFSRSTAISLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA
RLANIPEEIIQKGHKKAKEFEKTTVSFRLFKEMCFLVEDQNMTFLTLKPILQKIAEI
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcagagcactctgttcagcttctttcctaaatctccgccgctcagcgcctcc
tcctcggcggcggccaaggccagccctgaagcctcttgtccctccgctaaggttaaagcc
caaacctccccccgggagaatggcagcggggcccggccggccaagaggtgccgagctgcg
gctgcctcccccaaggccagtccgctgttcgccggcggagagaggaaagcgggcaagaag
caggcggccccggggcctccggctctcggtcaagcttgtgaatttgctccgggggatctg
gtgtgggccaaactggaagggtatccgtggtggccaagcctggtctataaccatccaact
gctgaggagtatctcaggggcaaagggaagtctctccgtattcatgtccagttctttgat
gatcctccaacaagaggctgggttagtgtgaagtatgtcaggttgtacacaggtccggga
tgtaaggaggctcagaggggtggcatctatttcagtgggaaacctgaaatccgcagggca
gtggagctcgcagatgctgcttttccgaaatcgagagagaaacgtttggaattggccgtg
tgcactgaaaattccgaaccagaggaagaagaggaggaggaggaggaggaaatggaggtg
actgaccagtcggcagcgagcgaagaagataaagaaaataacagcgaggacgagaaggtg
aaagggcagaggtcgaggaccacacgatcagccagcaccaaagccaagaggcggcggctg
gtggtggagtcggacagtgacgcagaaagctccgaggaggagttcaggccggagcagcat
gacgggagcagtgaggaatgcagcagcggggtcgacgagagggagctcagtgagccggat
cctgagactgaccccgacagtccagtcaagacgccattcaaacggaaacgcggaggcaca
gccaggaagaaaagtgcctccagctccccctcggagctgcccaagagagcggcgacggga
gcagtgtcctcaagcaccaagtccagactctcggcattctctgctccagagacctttgag
tgccagtctaacagcgggggagcaggcagtccctcgccagccaccacctgggaccacgag
aagctcgagtggttcaaaccaggcaagaggaaggacgctaagagacgaaaggagggtgac
cccgaatacgacccgtccacactgtacgtccctgacgacttcctgagcaggtgcactccg
ggcatgcggcggtggtgggagctgaagtcccagatgtttgacaccgtgattttctacaaa
gttggcaagttttacgagctgtaccatgtggacgccgtcactggcgtgaccgagctgggc
ctgtcattcatgaaaggcagctgggcgcactcgggcttccccgagattgcctttggccgt
ttctcggacgccctggttcagaagggctacaaggtggcgcgggtggagcagacggagacg
cccgagatgatggaggcccgctgcaagtcactgcatcacccaaccaagtttgaccgggtg
gtccggcgcgaggtctgccgggtcatcaccaagggcacgcagacgtacagcgtcctggac
gggagtgcagccgagagctgcagcaagtacctgctgtgccttaaggaggcagcggcgagc
actgagccagctggccaggcctgctcctatggtgtctgcttcgtcgacacatccgtcggc
aagttccacgtgggccagttcgtggacgaccggcactgctcccgcctgcggaccctgttg
gcacatcaccccccggtgcaggtgctgttcgagaggggcaacccgtcggcggagaccagg
aagatcctgaaaggctgcctgggctcggccttgcaggaaggcctgcagcctgcttcccag
ttctgggacgcctccaaaaccctccgagtgctggccgaggagggctatttcagtgaagtg
agggagcagggggtccctctgcctgatgctctgcggctgatggtgtccgagactgactct
ctcggcctcaccccgggcgaaggctatgacctggccctctcagctctcggcgcctgtgtc
ttctacctcaagcggtgccttatcgaccaggagctgctatcgatggccaacttcgaggag
tacactcccgtggatgtgtctgccgatcgcgcgaaggggtcccctacccgccctgctgtg
gggcgacagcgccttgtactggatggcgtcaccctgaccaacctagagctgctgcagaat
gccaccactggcacccgcgagggcaccctgctggagcagctggaccactgctgcacttac
tttggcaagcggttactgaagcagtggctgtgtgccccactgtgccagcctctcgccatc
gaggaccggctcagtgccattgaggatctcatggctgtgcccagcactgtcgcggagctc
gtcgagctgctgaagaaggtgcccgacttggagcgactcctgagccgcatccacagcatc
gggtcaccgctgaaaagcaaggaccaccccgacagccgcgccgtgttctacgaagagacc
agctacagcaagaagaaaatcgccgacttcctgtcttccctggaaggtttcaaagtcttc
caagagattctacaggttgtcgagccgtctctgaatgccttccggtctcggttgctcaga
cagattgtcaatctgaaaggcagcactgccgaaggcctcttccctgatctctccgctgag
ctgaagaggtgggacacagcttttgaccaccagaaggcgaggaacactggagtcatcact
ccaaaagctggctttgaccctgattatgaccaggcccttgccgacatcaagcagacggag
cgcgagctgcaggaatacctggaggcgcagcgtgtgaggctctgctgccgcagtatggtt
tactggggctcgggccgcaatcgctatcagctggaggttcccgaacacatcgctgaccgc
cgcgtgccggaggattatgagctgaagtcgaccaaaaagggctacaaacgttactggact
aaatcgatcgagaagctgctggaaacgatgaacaatgctgaggagaggcgggacagtgct
cttcaggactgcatgaggaggcttttctacaactttgacaagaattacaaaagctggcag
gcagcagttgactgtatggctgtccttgatgttttgttgagcctaacacactacagtcag
agtggagatgggccgatgtgcagacctgtcgtaatgcttgctgaagatgacacgcgaccg
ttcctagagcttcgagcttcacgccacccatgtgtcttaaaaaccttttttggggatttc
atcccgaatgacgtgtttattggctgcacggacgttgaagatttggacggcggtcccagt
aacaaccaggcttcctgcctgcttgtaacaggccctaatatgggaggcaaatctacactc
atgagacaggttggcctcctggtcatcctggcacaactggggtgctatgtgcctgcagag
agctgcaaatttaaccctgtagacagagttttcacacgtctgggagcatctgatagaatc
atgtcaggtgaaagcaccttctttgtggaactcagcgagacctccagtatcttgcaacat
gcaacttcacattcccttgtgcttctggatgaattgggccgtggtacagcaacatatgac
ggcacagcaattgctagtgcagtagtgaaggagcttgctgaaaatatcaagtgccgcact
ttgttttctacacactaccattcccttgtggaagatttctctcgctccacagcaatcagt
ttaggacatatggcctgcatggttgagaatgagtgcgaagatccaagtcaagaaacgatc
acgtttctatataaatttatcaaaggagcttgtccgaagagttatggatttaatgcagca
agacttgcaaacattcctgaggaaattatccagaaaggtcacaagaaagctaaagaattt
gagaagactacagtttccttccgacttttcaaagagatgtgttttttggttgaagaccaa
aatatgaccttccttaccctaaagccaatactgcagaagattgctgaaatctga
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