Hemiscyllium ocellatum (epaulette shark): 132820115
Help
Entry
132820115 CDS
T09720
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03013
Nucleocytoplasmic transport
hoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132820115 (upf3b)
03015 mRNA surveillance pathway
132820115 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132820115 (upf3b)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132820115 (upf3b)
mRNA cycle factors
P-body specific factors
132820115 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
132820115
NCBI-ProteinID:
XP_060688023
LinkDB
All DBs
Position
11:complement(17547668..17565774)
Genome browser
AA seq
479 aa
AA seq
DB search
MKEDKENTKPREKKVEVKYEERAEKPEKKEKKEVLTKVVIRRLPPTLTKEQLEEQLAPLP
EHDYFEFFSTNSSLFPHVFSRAYINFKNQDDIVLFRDQFDGYVFIDSKGQEYPAIVEFAP
FQKIPKKKSKKKDAKVGTVEDGMDPIHFSDDPEYKKFLESYNNADDERNSNNPETLLEEI
EAKTKELAAKKTTPLLDYVKNKQRIREEKREERRRRELEKRRLREEEKRKWREDERRKRR
EAEKQKKMLEKGFEKDKDRSKDEPKIKLLKKADKGDDSSSVEKPREKVKKLERERAKEDR
PFTGQGKRLESTIKEDKGKKHDRVEDDSGRDYRDKEDRERERRLKDKERRKRQEEERWKP
RERCEADKSFRKKEEEIKKENDQTSEKTRKKESSEAASSYDRLERGKEEKKEDGTAKKER
IRNKDRPTMQLYQPGARSRSRLMTSSKSNDSSIKSPEASEEKKEEFESSRNIAEKESEE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggagaataccaaacccagggagaagaaggtggaggtcaaatatgag
gaaagggcagagaaacccgaaaagaaggagaagaaggaggtcttgaccaaggtggtgatc
cgtcgtttgcctccaactctgacaaaagagcagttagaagagcaacttgcccctttgcct
gaacatgattactttgaatttttctctaccaattcaagtttgtttcctcatgtcttttcg
agagcatacatcaactttaaaaatcaggacgacattgtcctcttcagggatcaatttgat
ggctatgttttcattgatagcaaagggcaggagtaccctgcgattgtagaatttgcaccc
tttcagaaaattccaaaaaagaagagcaagaaaaaagatgcaaaagtgggaactgttgaa
gatggtatggatcctatacattttagtgatgatcctgaatataaaaagttcttggagagt
tataataatgcagatgatgagagaaattcaaacaatcctgaaacacttttggaggaaatt
gaagctaaaactaaagagttagcagctaagaaaaccacaccccttttggactatgtgaaa
aataaacagagaataagagaggagaaaagagaagaaaggagacgaagagagttggaaaag
aggcgactccgtgaagaagaaaagagaaagtggagagaggacgaaagacggaaaaggaga
gaagcggagaagcaaaagaagatgttagaaaaaggatttgaaaaagacaaggacagatca
aaggatgagccaaagataaaacttctgaagaaggcagataaaggggatgactcctccagt
gtagaaaagccaagggagaaagtgaagaaactggagagagagcgagctaaagaggacaga
ccattcactggacagggtaaacgcctggagagcaccatcaaagaagataaaggaaagaag
catgacagggttgaagatgacagtggaagagattaccgggataaagaggatcgggagcgt
gagagaaggctaaaggacaaagaacgtcggaaacggcaggaggaagaacgatggaagccg
agggagcgatgtgaggcagacaaatctttcagaaaaaaggaggaagagattaagaaggaa
aatgatcaaacaagcgagaagaccaggaagaaggaaagctcagaagctgcatcaagttat
gaccggttggagagaggaaaagaggagaagaaggaggatggcacagcaaagaaggaacga
atccgaaataaggaccgaccaacaatgcagctgtaccagccaggagcacggagtcgcagc
cggttaatgaccagttcaaagtctaatgacagcagcataaagtcaccagaagcaagtgag
gagaaaaaggaggaatttgagtcttccaggaatattgcagaaaaggagagtgaagaatga
DBGET
integrated database retrieval system
