Hemiscyllium ocellatum (epaulette shark): 132820155
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Entry
132820155 CDS
T09720
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132820155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132820155
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132820155
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
132820155
NCBI-ProteinID:
XP_060688087
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Position
11:complement(29326550..29378336)
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AA seq
529 aa
AA seq
DB search
MATEMDSLGSAAESTAAPGGGLDADDDEENWLYGDENPGKQEEVALVDGGEDSLKSLQEP
SQEFKVSNLEMAEAASQNGDEDDSDSDSDDDDVKVTIGNIKTGAPQYMGTPMNLNLKSGR
PYGSSAAKLHSRGIDLDAPGSINGIPVIEADLDLFEDKPWRKPGADLSDYFNYGFNEETW
KAYCEKQRRLQLGLDPILASASESKKLVQQGKVSNIEKDLENNLPKMELKADFTSPPGGR
MKAGPPPNSFSSRKLAGAIDVISGYTGSIRRVEGRRRDKHGGDESAIQVLGDHGNKRPPF
PAPTGPPPPIPGPPPHFLHPPPPVSSGPPPMHPPGMPPPGPLPALFPPPVVPPPSLLMPT
IDGGPPPGYDNRPPPLFPYSTADSGLIGYPAISTTHTSWMNTVEKSTNSHWEYQGHRRER
EREHDRDRNRERDRGPTPTTSEYSSRERNYDRDYHRSRDRSRDREDRHRERRHKDKDDSK
HKSSRRKQHESEEGESHRRHKHKKNKRNKEDKEVGDEGAAETEGTETKD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgaaatggactcgctgggctcggctgcagagagtacggcagcgcccggcggc
ggcctggacgccgatgatgatgaagagaactggctgtatggagatgaaaaccctggaaaa
caagaggaggtggctttggttgatgggggtgaagattctttaaaatcgctgcaggagccg
tcacaagaattcaaagtcagcaatttggaaatggctgaggctgcttcacaaaatggtgat
gaggatgacagtgacagcgacagtgatgacgatgatgtgaaggtcactattggcaacatt
aagacaggtgcaccacaatatatggggactccgatgaacttgaatctgaagagtggacgg
ccttatggctcttctgcagcaaagttgcattcccgaggtattgacttagatgcccctggg
agcatcaatgggattccagttattgaggcagatttagatttgtttgaagacaaaccttgg
agaaaaccaggagctgatctttctgattattttaactatggcttcaatgaagagacctgg
aaagcttattgcgagaagcaacgaagacttcagttaggacttgatcctatacttgcatct
gcttcagagagcaaaaaattggttcagcaagggaaagtgagcaatatagagaaagatctg
gaaaataatttacccaaaatggagttgaaagctgattttacttctcctccaggtggaagg
atgaaagcaggcccaccgcctaatagtttttcctccagaaaacttgctggcgcgattgac
gttattagtggatacactggttccatcaggagggtagaaggaaggcgacgagacaaacat
ggaggagatgagagtgcaattcaggttcttggagaccatggaaacaaaagaccaccattt
ccagctcccacaggtcctcctcctccaatacctggaccaccccctcatttcttgcatcca
ccccctcctgtcagcagtggaccaccacccatgcacccaccaggaatgccgccacctggg
cctcttccagcattatttccaccaccagttgtgccccctccatcattacttatgccaacc
atagacggtggtccacctccaggctatgacaacaggccacctcctttattcccctatagt
actgcagactctggactaattggttatcctgctatctctacaacacacacgtcctggatg
aacacagttgagaaaagtaccaacagccactgggaataccaagggcatcggcgagaaaga
gagcgagaacatgatcgagacagaaatcgtgagcgagatcgtggcccaacaccaacaaca
tctgaatacagtagcagagaacgtaactatgacagagactatcatcggagcagagatcgc
agtagagaccgagaagatcgccacagggaacggcggcacaaagacaaagatgattccaag
cacaagtcctcgaggcgcaaacagcacgagagtgaggaaggagaaagtcacagacgtcac
aaacacaagaaaaataaacgaaacaaagaggataaagaagttggggatgaaggtgctgca
gagaccgagggaactgaaactaaagactaa
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