Hemiscyllium ocellatum (epaulette shark): 132820379
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Entry
132820379 CDS
T09720
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04510
Focal adhesion
hoc04512
ECM-receptor interaction
hoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132820379 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132820379 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132820379 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hoc04147
]
132820379 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132820379 (col4a6)
Exosome [BR:
hoc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132820379 (col4a6)
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132820379 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132820379
NCBI-ProteinID:
XP_060688432
LinkDB
All DBs
Position
11:complement(21352386..21770951)
Genome browser
AA seq
1705 aa
AA seq
DB search
MTDWILLVVLGCLAADLVQAGAKNAYTGPCAGRDCSRGCQCLPEKGARGQPGLIGPQGRS
GPPGFSGPEGLRGPKGEKGNPGNPGAGGMKGEKGPIGVPGFVGMNGIPGHPGQQGPRGRP
GLDGCNGTIGSPGFPGSAGFPGSLGFPGESGLKGAKGEPIQISGNRDELRGEPGLPGLDG
VPGPAGSPGSDGAVGPRGQLGLPGRPGPPGFPGLKGNMGLGFQGQKGGKGDVGLPGPPGP
PPATGQLEFGGQPGFPKGDKGEKGDMGSPGPRGEMGLPGLPGYSDVVRAKGEKGIPGLPG
PRGSFGLDGSPGIPGKKGQPSFPGAYGSDGYPGMKGDQGDVGPPGPPAYIDGSGTLIKGP
PGDSGSPGLPGPSGIQGIPGSPGLPGSPGFPAQVRGSKGLPGFSGVKGPKGERGAPGRMI
FSQPGPQGPPGLPGPPGPPGIPGPSSSRTRVPGPVGPPGLPGPAGPPGFRGSKGSKGEPG
ACACDGVITGNGIQGPPGPPGEPGKPGFNSGKGQCGDPGPPGPPGQTGPPGVPGVPGGLG
PKGQKGDSSGISAKGQKGDPGNPGQRGPSGTPGKPGNDGFPGLPGPPGEPGDSGTGIRGA
KGLPGRRGPKGPPGEMGTTGVGFPGPPGFQGPPGDPGVDGIPGPPGLPGAPGDCCCGETA
GEGDLHTEGGITLPCVIPGNVGLRGRPGVTGRPGPKGRPGFPGSPGRPGIDGPKGPPGDP
GLLGESGRPGFPGPPGDQGRPGLPGLGGNEGSPGKQGAPGFPGQKGRPGDVYGAERGAPG
QPGPSGKPGLKGFLGDPGFPGAKGVDGRPGFSSLKGERGNPGYPGSQGLPGPPGPNGPGV
IPGFPGEMGRPGELGHPGFPGPKGLAGDRGPPGPAGMKGFPGFPGDRGLPGSPGRPGPPG
EPGRRAQFNRYGLKGEKGSPGVVGFPGIPGRQGQPGFDGNKGEMGSPGRPGFPGSIGRKG
MKGDRGDVGFPGRPPPLVGGFPGPRGDPGNPGKQGFSGMRGNKGFPGSIGRPGLPGPSGR
PGFEKGRPGDQGPPGYPGPPGQPGPKGSFGINGFPGSTGEKGNDGPPGLPGYPGELGFVG
PKGEPGDRVTVIGHMGRKGERGQPGYPGGRGQTGLRGDPGLSGSPGPPGLKGLPGERGRP
AGPGAPGLQGMAGTPGYQGPRGYPGPPGPPGQLSQVGQKGLPGSPGLDGLNGLPGPKGPR
GTPGAVLAAPPGPPGLPGLKGEYGAPGIGVGAPGYPGQKGPRGDPGRAGSMGLPGKPGPP
GATIPSNIPGKPGDVGPPGYDGEQGPSGPVGPPGPPGLGFERGDPGDPGFPGTPGRQGAR
GDVGPPGLPGVPGPPGFKGERPEQSFMGFPGTNGPPGDPGYPGLKGDTGPEGFPGEQGLP
GAVSEIIHTTPVPGPPGLPGPAGLSGSSGNQGIPGYLGFPGVKGQLGKPGRVGPNGLPGL
PGMSGDPGLKGYPGPPGLEGSPGKPGTAGFPGMPARSVNVGYTLVKHSQSDSVPPCPLGM
NRLWDGYSLLFVEGQEKTHNQDLGMAGSCLPRFTTMPFLYCNVDEVCHYANRNDKSYWLS
TTAPIPMMPVSNQQIQRYISRCSVCEVPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRSTPFIECNGARGTCHYFANKYSFWLTIVEEGQQFVES
PPSETLKAGQLRTRVSRCQVCIKYL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattggatcctgcttgtggtcctaggctgtttggctgctgacttggtccaagcg
ggggcgaagaatgcttacactgggccgtgtgcaggtcgagactgcagcagaggttgccaa
tgtttgccggagaagggggcgaggggtcagcctggactgattggaccacagggacgcagt
gggcctccagggttttctggaccagagggattaaggggaccgaaaggtgaaaaaggtaac
cctggtaacccgggagctggaggcatgaagggagaaaagggtccaatcggtgtgccagga
tttgtcgggatgaatgggattccaggtcacccaggtcagcaaggtcctagaggacgccca
ggtctggacgggtgcaatggtaccatcggatctccaggttttcctggcagtgcaggtttt
cctggatctctaggattcccgggtgaatcgggtctcaaaggagccaaaggagagccaatc
caaatctcaggcaaccgtgatgaactcaggggtgagccgggcctaccaggtttggatgga
gttcctggtccagcgggctctcctggatcagatggtgctgtgggtcccagaggacagctg
ggtcttccaggccgacctggtcccccaggctttccagggttgaaaggtaacatggggttg
ggattccaaggacagaaaggaggaaagggagacgtgggtctgccaggtcctccaggacca
ccacctgccaccgggcaacttgagtttggtggacaacctggatttccaaaaggggacaaa
ggtgaaaagggtgatatgggatcacctggtcctcgtggagagatgggattgcctggcctt
ccgggatattcggatgtagtgagagcaaaaggagagaaaggaatccctggtctcccaggc
ccaaggggatcttttggtttagatggatcacctggaattccaggaaagaaaggccaacca
agcttccctggagcatacggaagtgatggttatccaggaatgaagggtgaccagggtgat
gtgggtccaccaggacccccagcttacatagatggaagtggtactcttattaaaggtccc
cctggagattcaggttcaccagggctcccaggcccttcaggaatccaaggcataccaggt
tcaccgggattgccaggatctccgggctttccagcacaagttcgaggctccaagggttta
ccaggattttcaggtgttaaaggacctaaaggcgagagaggagcaccaggaagaatgata
ttctcacaaccgggaccacaagggccaccaggattaccaggcccacctggacctcctggc
ataccaggtccttcaagtagtcggaccagagtccctggaccagttggtcctccaggattg
cctggaccagccggaccaccaggattcaggggaagtaaaggctctaagggtgagccaggt
gcttgtgcatgcgatggagtgataactgggaatggaattcaaggaccccccggcccacct
ggtgaaccaggaaagcctggtttcaatagtggcaaaggccagtgtggagacccaggaccc
ccaggacctccaggacaaacaggccctccaggcgttccaggtgtgccaggaggattaggt
ccaaaaggacagaagggagactcatcaggtatatcagcaaaagggcaaaaaggagatccc
ggtaatccaggccaaaggggaccttcaggcactccagggaaaccagggaatgatggcttc
ccaggtttaccaggacctccaggtgaacctggtgacagtggaacaggcattcgtggtgct
aaaggtcttccaggcaggcgtggtccaaagggtcccccaggtgagatgggtacaacgggc
gttggattcccaggccctccgggtttccagggtcctccaggtgatccaggagttgatggt
ataccaggaccaccaggattaccaggggcaccaggtgactgttgctgcggggaaaccgct
ggggaaggcgaccttcatacagagggaggaatcactctgccctgtgtgatcccaggcaat
gtaggtttgaggggtagacctggagtaacaggacgcccaggtccaaaaggtaggccaggc
ttcccaggtagtccaggacgaccaggaattgatggaccaaaaggaccccctggagatcca
ggcttgttgggagaatcaggccgaccagggtttcctgggccaccgggtgatcagggacgg
cctggtctccctgggctgggtggaaatgaaggttctcctggaaaacagggtgccccagga
tttccaggtcagaagggacgcccaggtgatgtgtatggtgcagaaagaggtgccccagga
caaccaggtccaagtggaaaaccaggattgaaaggatttctcggagatcctgggtttcca
ggagccaaaggtgttgatggtcgaccaggattttcaagtctaaaaggtgaaagaggaaat
cccggctaccctggctctcaaggcttgcctggtcccccaggcccgaatggaccaggtgtc
atacctggtttcccaggagaaatgggaaggcccggtgagcttggtcacccaggttttccc
ggaccgaaaggtttagctggagatcgtggacccccaggtcctgcgggtatgaagggattt
ccaggatttcccggagatagaggtctccctggatcaccaggccgccctggtcctccagga
gaacctggtcgtcgagctcaatttaatcgatatggattgaaaggcgaaaaaggctctcct
ggtgtggttggcttcccaggcattcctggtcgacaaggccagccaggctttgatggaaat
aaaggagaaatgggcagcccaggtagaccaggcttccccggttccataggcaggaaagga
atgaaaggtgataggggtgatgttggattccctgggcgcccgcctcctcttgtaggaggc
tttccaggaccaagaggtgaccctggcaatcctgggaaacaagggttttctgggatgaga
ggaaacaaaggcttcccagggtcaattggtcggcctggactcccaggaccaagtggccgt
cctgggttcgagaaaggtagaccaggtgatcaagggcctccgggatatcctggaccacca
ggacaaccagggccgaaaggctcctttggcattaatggtttccctggatcgacgggagaa
aagggtaatgatggtccaccgggtcttcctggataccctggtgaattgggttttgttggt
ccaaaaggtgaacctggtgatagagtaactgtgataggccatatgggaagaaaaggagaa
cgtggacaaccagggtatccaggtggaagaggacagactggtttgcgtggtgaccctggt
ctctcaggtagccctgggcctcctggacttaaaggattgccaggtgaaagaggtcgacca
gctggccccggtgctccaggtctgcaagggatggctgggactccaggataccagggacct
cgaggatatccaggtcctccaggacctccaggtcaactttctcaagtaggacagaaagga
ctcccaggctctccaggactagatggtttgaatggtttgcctggacctaaaggacccaga
ggaacaccaggtgctgttttggcggcaccgccagggcctcctggtcttcctgggttaaag
ggtgaatacggtgcaccaggcattggtgtaggtgcaccaggatatccaggacaaaaagga
cctcgaggagatccaggccgtgctggatcaatgggtcttccagggaaaccgggtcctcca
ggagccaccatcccttcaaacattcctgggaagccaggtgatgttggtcctcctggatac
gatggtgaacaaggtccttcaggtccagttggtcctcctgggccaccaggcttgggtttt
gaaagaggagatcctggtgaccctggctttcctggtacccctgggcgacaaggtgcaagg
ggggacgttgggcctcctggactgccaggcgttcctggtcctccaggattcaaaggtgaa
aggccagaacaaagcttcatgggatttccaggaacaaacggccctcctggtgatccagga
tacccaggactcaaaggggatactggtcctgaaggttttccaggagaacaaggcttaccg
ggagcggtatcagaaattatacacacgacaccagtccccggtcccccaggtctgcccgga
cctgctggtttatctggttcttcgggaaatcaaggcatccctggttatttaggatttcca
ggtgtcaaaggccagcttgggaaaccaggtagagtgggaccaaatggtttacctggcctt
ccgggtatgtcaggagatccaggcctgaagggatatcctggaccacctggattagaaggt
agccctgggaagccgggaacagcaggatttccaggaatgccagctcgtagtgtgaatgtg
ggctacacgctggtaaaacacagtcaatcagatagcgtgcctccctgcccattgggaatg
aacagattgtgggatggatacagcttactgtttgtggaaggtcaagaaaagactcataac
caggatttgggaatggctggctcatgcttgccccgtttcaccactatgcctttcctgtac
tgcaatgttgatgaggtgtgccattacgcaaacaggaatgacaagtcttactggctttct
accactgccccaatccccatgatgccagtctccaaccagcagatccaacgctacatcagc
cgctgctcagtctgcgaggtgccatctcaggctattgctgtgcatagccaggacataacc
attccacagtgccctgaaggctggcggagtctgtggataggttactctttcctcatgcac
acagctgctggtgctgaaggtggaggccagtctcttgtctcgccaggctcctgcctggag
gactttcgctccacccccttcatcgaatgcaatggcgcccgcggcacgtgccactacttt
gccaacaagtacagcttctggctgaccattgtggaggagggccagcagtttgtggaatcg
ccaccctcggagacgctgaaagcgggtcagctgcgcactcgggtcagtcgctgtcaagtc
tgcatcaagtatttgtag
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integrated database retrieval system
