Hemiscyllium ocellatum (epaulette shark): 132820379
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Entry
132820379 CDS
T09720
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04382
Cornified envelope formation
hoc04510
Focal adhesion
hoc04512
ECM-receptor interaction
hoc04518
Integrin signaling
hoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132820379 (col4a6)
04518 Integrin signaling
132820379 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132820379 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132820379 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132820379 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hoc04147
]
132820379 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132820379 (col4a6)
Exosome [BR:
hoc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132820379 (col4a6)
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132820379 (col4a6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132820379
NCBI-ProteinID:
XP_060688432
LinkDB
All DBs
Position
11:complement(21352386..21770951)
Genome browser
AA seq
1705 aa
AA seq
DB search
MTDWILLVVLGCLAADLVQAGAKNAYTGPCAGRDCSRGCQCLPEKGARGQPGLIGPQGRS
GPPGFSGPEGLRGPKGEKGNPGNPGAGGMKGEKGPIGVPGFVGMNGIPGHPGQQGPRGRP
GLDGCNGTIGSPGFPGSAGFPGSLGFPGESGLKGAKGEPIQISGNRDELRGEPGLPGLDG
VPGPAGSPGSDGAVGPRGQLGLPGRPGPPGFPGLKGNMGLGFQGQKGGKGDVGLPGPPGP
PPATGQLEFGGQPGFPKGDKGEKGDMGSPGPRGEMGLPGLPGYSDVVRAKGEKGIPGLPG
PRGSFGLDGSPGIPGKKGQPSFPGAYGSDGYPGMKGDQGDVGPPGPPAYIDGSGTLIKGP
PGDSGSPGLPGPSGIQGIPGSPGLPGSPGFPAQVRGSKGLPGFSGVKGPKGERGAPGRMI
FSQPGPQGPPGLPGPPGPPGIPGPSSSRTRVPGPVGPPGLPGPAGPPGFRGSKGSKGEPG
ACACDGVITGNGIQGPPGPPGEPGKPGFNSGKGQCGDPGPPGPPGQTGPPGVPGVPGGLG
PKGQKGDSSGISAKGQKGDPGNPGQRGPSGTPGKPGNDGFPGLPGPPGEPGDSGTGIRGA
KGLPGRRGPKGPPGEMGTTGVGFPGPPGFQGPPGDPGVDGIPGPPGLPGAPGDCCCGETA
GEGDLHTEGGITLPCVIPGNVGLRGRPGVTGRPGPKGRPGFPGSPGRPGIDGPKGPPGDP
GLLGESGRPGFPGPPGDQGRPGLPGLGGNEGSPGKQGAPGFPGQKGRPGDVYGAERGAPG
QPGPSGKPGLKGFLGDPGFPGAKGVDGRPGFSSLKGERGNPGYPGSQGLPGPPGPNGPGV
IPGFPGEMGRPGELGHPGFPGPKGLAGDRGPPGPAGMKGFPGFPGDRGLPGSPGRPGPPG
EPGRRAQFNRYGLKGEKGSPGVVGFPGIPGRQGQPGFDGNKGEMGSPGRPGFPGSIGRKG
MKGDRGDVGFPGRPPPLVGGFPGPRGDPGNPGKQGFSGMRGNKGFPGSIGRPGLPGPSGR
PGFEKGRPGDQGPPGYPGPPGQPGPKGSFGINGFPGSTGEKGNDGPPGLPGYPGELGFVG
PKGEPGDRVTVIGHMGRKGERGQPGYPGGRGQTGLRGDPGLSGSPGPPGLKGLPGERGRP
AGPGAPGLQGMAGTPGYQGPRGYPGPPGPPGQLSQVGQKGLPGSPGLDGLNGLPGPKGPR
GTPGAVLAAPPGPPGLPGLKGEYGAPGIGVGAPGYPGQKGPRGDPGRAGSMGLPGKPGPP
GATIPSNIPGKPGDVGPPGYDGEQGPSGPVGPPGPPGLGFERGDPGDPGFPGTPGRQGAR
GDVGPPGLPGVPGPPGFKGERPEQSFMGFPGTNGPPGDPGYPGLKGDTGPEGFPGEQGLP
GAVSEIIHTTPVPGPPGLPGPAGLSGSSGNQGIPGYLGFPGVKGQLGKPGRVGPNGLPGL
PGMSGDPGLKGYPGPPGLEGSPGKPGTAGFPGMPARSVNVGYTLVKHSQSDSVPPCPLGM
NRLWDGYSLLFVEGQEKTHNQDLGMAGSCLPRFTTMPFLYCNVDEVCHYANRNDKSYWLS
TTAPIPMMPVSNQQIQRYISRCSVCEVPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRSTPFIECNGARGTCHYFANKYSFWLTIVEEGQQFVES
PPSETLKAGQLRTRVSRCQVCIKYL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattggatcctgcttgtggtcctaggctgtttggctgctgacttggtccaagcg
ggggcgaagaatgcttacactgggccgtgtgcaggtcgagactgcagcagaggttgccaa
tgtttgccggagaagggggcgaggggtcagcctggactgattggaccacagggacgcagt
gggcctccagggttttctggaccagagggattaaggggaccgaaaggtgaaaaaggtaac
cctggtaacccgggagctggaggcatgaagggagaaaagggtccaatcggtgtgccagga
tttgtcgggatgaatgggattccaggtcacccaggtcagcaaggtcctagaggacgccca
ggtctggacgggtgcaatggtaccatcggatctccaggttttcctggcagtgcaggtttt
cctggatctctaggattcccgggtgaatcgggtctcaaaggagccaaaggagagccaatc
caaatctcaggcaaccgtgatgaactcaggggtgagccgggcctaccaggtttggatgga
gttcctggtccagcgggctctcctggatcagatggtgctgtgggtcccagaggacagctg
ggtcttccaggccgacctggtcccccaggctttccagggttgaaaggtaacatggggttg
ggattccaaggacagaaaggaggaaagggagacgtgggtctgccaggtcctccaggacca
ccacctgccaccgggcaacttgagtttggtggacaacctggatttccaaaaggggacaaa
ggtgaaaagggtgatatgggatcacctggtcctcgtggagagatgggattgcctggcctt
ccgggatattcggatgtagtgagagcaaaaggagagaaaggaatccctggtctcccaggc
ccaaggggatcttttggtttagatggatcacctggaattccaggaaagaaaggccaacca
agcttccctggagcatacggaagtgatggttatccaggaatgaagggtgaccagggtgat
gtgggtccaccaggacccccagcttacatagatggaagtggtactcttattaaaggtccc
cctggagattcaggttcaccagggctcccaggcccttcaggaatccaaggcataccaggt
tcaccgggattgccaggatctccgggctttccagcacaagttcgaggctccaagggttta
ccaggattttcaggtgttaaaggacctaaaggcgagagaggagcaccaggaagaatgata
ttctcacaaccgggaccacaagggccaccaggattaccaggcccacctggacctcctggc
ataccaggtccttcaagtagtcggaccagagtccctggaccagttggtcctccaggattg
cctggaccagccggaccaccaggattcaggggaagtaaaggctctaagggtgagccaggt
gcttgtgcatgcgatggagtgataactgggaatggaattcaaggaccccccggcccacct
ggtgaaccaggaaagcctggtttcaatagtggcaaaggccagtgtggagacccaggaccc
ccaggacctccaggacaaacaggccctccaggcgttccaggtgtgccaggaggattaggt
ccaaaaggacagaagggagactcatcaggtatatcagcaaaagggcaaaaaggagatccc
ggtaatccaggccaaaggggaccttcaggcactccagggaaaccagggaatgatggcttc
ccaggtttaccaggacctccaggtgaacctggtgacagtggaacaggcattcgtggtgct
aaaggtcttccaggcaggcgtggtccaaagggtcccccaggtgagatgggtacaacgggc
gttggattcccaggccctccgggtttccagggtcctccaggtgatccaggagttgatggt
ataccaggaccaccaggattaccaggggcaccaggtgactgttgctgcggggaaaccgct
ggggaaggcgaccttcatacagagggaggaatcactctgccctgtgtgatcccaggcaat
gtaggtttgaggggtagacctggagtaacaggacgcccaggtccaaaaggtaggccaggc
ttcccaggtagtccaggacgaccaggaattgatggaccaaaaggaccccctggagatcca
ggcttgttgggagaatcaggccgaccagggtttcctgggccaccgggtgatcagggacgg
cctggtctccctgggctgggtggaaatgaaggttctcctggaaaacagggtgccccagga
tttccaggtcagaagggacgcccaggtgatgtgtatggtgcagaaagaggtgccccagga
caaccaggtccaagtggaaaaccaggattgaaaggatttctcggagatcctgggtttcca
ggagccaaaggtgttgatggtcgaccaggattttcaagtctaaaaggtgaaagaggaaat
cccggctaccctggctctcaaggcttgcctggtcccccaggcccgaatggaccaggtgtc
atacctggtttcccaggagaaatgggaaggcccggtgagcttggtcacccaggttttccc
ggaccgaaaggtttagctggagatcgtggacccccaggtcctgcgggtatgaagggattt
ccaggatttcccggagatagaggtctccctggatcaccaggccgccctggtcctccagga
gaacctggtcgtcgagctcaatttaatcgatatggattgaaaggcgaaaaaggctctcct
ggtgtggttggcttcccaggcattcctggtcgacaaggccagccaggctttgatggaaat
aaaggagaaatgggcagcccaggtagaccaggcttccccggttccataggcaggaaagga
atgaaaggtgataggggtgatgttggattccctgggcgcccgcctcctcttgtaggaggc
tttccaggaccaagaggtgaccctggcaatcctgggaaacaagggttttctgggatgaga
ggaaacaaaggcttcccagggtcaattggtcggcctggactcccaggaccaagtggccgt
cctgggttcgagaaaggtagaccaggtgatcaagggcctccgggatatcctggaccacca
ggacaaccagggccgaaaggctcctttggcattaatggtttccctggatcgacgggagaa
aagggtaatgatggtccaccgggtcttcctggataccctggtgaattgggttttgttggt
ccaaaaggtgaacctggtgatagagtaactgtgataggccatatgggaagaaaaggagaa
cgtggacaaccagggtatccaggtggaagaggacagactggtttgcgtggtgaccctggt
ctctcaggtagccctgggcctcctggacttaaaggattgccaggtgaaagaggtcgacca
gctggccccggtgctccaggtctgcaagggatggctgggactccaggataccagggacct
cgaggatatccaggtcctccaggacctccaggtcaactttctcaagtaggacagaaagga
ctcccaggctctccaggactagatggtttgaatggtttgcctggacctaaaggacccaga
ggaacaccaggtgctgttttggcggcaccgccagggcctcctggtcttcctgggttaaag
ggtgaatacggtgcaccaggcattggtgtaggtgcaccaggatatccaggacaaaaagga
cctcgaggagatccaggccgtgctggatcaatgggtcttccagggaaaccgggtcctcca
ggagccaccatcccttcaaacattcctgggaagccaggtgatgttggtcctcctggatac
gatggtgaacaaggtccttcaggtccagttggtcctcctgggccaccaggcttgggtttt
gaaagaggagatcctggtgaccctggctttcctggtacccctgggcgacaaggtgcaagg
ggggacgttgggcctcctggactgccaggcgttcctggtcctccaggattcaaaggtgaa
aggccagaacaaagcttcatgggatttccaggaacaaacggccctcctggtgatccagga
tacccaggactcaaaggggatactggtcctgaaggttttccaggagaacaaggcttaccg
ggagcggtatcagaaattatacacacgacaccagtccccggtcccccaggtctgcccgga
cctgctggtttatctggttcttcgggaaatcaaggcatccctggttatttaggatttcca
ggtgtcaaaggccagcttgggaaaccaggtagagtgggaccaaatggtttacctggcctt
ccgggtatgtcaggagatccaggcctgaagggatatcctggaccacctggattagaaggt
agccctgggaagccgggaacagcaggatttccaggaatgccagctcgtagtgtgaatgtg
ggctacacgctggtaaaacacagtcaatcagatagcgtgcctccctgcccattgggaatg
aacagattgtgggatggatacagcttactgtttgtggaaggtcaagaaaagactcataac
caggatttgggaatggctggctcatgcttgccccgtttcaccactatgcctttcctgtac
tgcaatgttgatgaggtgtgccattacgcaaacaggaatgacaagtcttactggctttct
accactgccccaatccccatgatgccagtctccaaccagcagatccaacgctacatcagc
cgctgctcagtctgcgaggtgccatctcaggctattgctgtgcatagccaggacataacc
attccacagtgccctgaaggctggcggagtctgtggataggttactctttcctcatgcac
acagctgctggtgctgaaggtggaggccagtctcttgtctcgccaggctcctgcctggag
gactttcgctccacccccttcatcgaatgcaatggcgcccgcggcacgtgccactacttt
gccaacaagtacagcttctggctgaccattgtggaggagggccagcagtttgtggaatcg
ccaccctcggagacgctgaaagcgggtcagctgcgcactcgggtcagtcgctgtcaagtc
tgcatcaagtatttgtag
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