Hemiscyllium ocellatum (epaulette shark): 132821051
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Entry
132821051 CDS
T09720
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
132821051 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132821051 (ddx3xa)
03041 Spliceosome [BR:
hoc03041
]
132821051 (ddx3xa)
03036 Chromosome and associated proteins [BR:
hoc03036
]
132821051 (ddx3xa)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132821051 (ddx3xa)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132821051 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
132821051 (ddx3xa)
Spliceosome [BR:
hoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132821051 (ddx3xa)
Chromosome and associated proteins [BR:
hoc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132821051 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
132821051
NCBI-ProteinID:
XP_060689536
LinkDB
All DBs
Position
12:53630992..53677534
Genome browser
AA seq
693 aa
AA seq
DB search
MDMHQSCSQIWLDQSDSSWDSGNRGNSSINGCHDGRESCINGYDRDRFELNSRGCTRNDT
SGHGGYRSRAFNPGAQQTAGSGFGYERDGGWSNKEVRDPYSSFGSRADRGKSSFFNDRGR
GRYDDRGRGNASDSAYDHFGSRTDRGGFGRMDRGGFGSREGGNSRWVEDKRDDDDWSKQL
PPNERMEQELFSASNTGINFEKYDDIPVEATGANSPPHIETFQDVNMGEIIMGNIELSRY
DRPTPVQKHAIPIIISKRDLMACAQTGSGKTAAFLLPILSQIYAEGPGEALKNAKAQDSS
KYGRRKQYPIALVLAPTRELAVQIYDESRKFAYRSKVRPSVVYGGADIGQQIRDLERGCH
LLVATPGRLVDMIERGKVGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDAMPPKDVRQT
LMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEQDKRSFLLDLLNAT
GKDSLTLVFVETKKGADSLEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVAT
AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNSNITKDLLD
LLVEAKQEVPSWLENLAYEQQHRSSGRGRTKSRFGAGFGARDYRQTSSSFNTRGNRSTGH
SGPRGYGGGGYGSYYNADGYGGAYNSQVDWWGN
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggacatgcatcagagctgcagtcaaatctggctggaccaaagtgattcaagctgggat
tctggaaatcgaggaaatagttcaattaatggttgccatgatggaagagaaagttgcata
aatggttatgaccgtgatcgttttgaactgaacagtagaggatgtactcgaaatgacaca
agtggccatggaggctatcggagtcgagcattcaatcctggtgcccagcaaactgctgga
tcaggctttggttatgagagagatggaggatggagtaacaaggaagttagagatccatac
agcagttttggatcacgagctgatcggggtaaatcgagtttcttcaatgatcgtggaagg
ggaagatatgacgatcgtggcagaggaaatgctagtgacagtgcttatgatcactttggg
agccgcactgaccgtggaggatttggcagaatggatcgtggaggatttggatctcgtgaa
ggtggaaatagtcgttgggtggaagacaaacgagatgatgatgattggtcaaaacagctg
ccaccaaatgaacgcatggaacaggagttgttttctgcaagtaacacaggaatcaacttt
gagaagtatgatgacattcctgttgaagcaactggtgccaactctcctcctcacattgaa
actttccaggacgtaaacatgggagaaataataatgggcaacattgagctgagtcgctat
gatcgtccaactcctgtgcagaaacatgcaatccccatcattatatcgaagagggatttg
atggcatgtgctcaaacaggctctggaaaaactgcagcatttttgcttcctattcttagc
caaatctatgcagaaggtcctggtgaagctttaaagaatgcaaaagctcaagattcctct
aaatatggtcgccgtaagcaatatccaattgctttggttctagctcctaccagagaactc
gcagtacagatctatgatgaatccagaaagtttgcatatcgttctaaagttcgaccatct
gtagtttatggaggagctgacattggacaacagatcagagatttggaacgtggatgtcat
ctgcttgttgccacacctggccgtttagttgatatgatcgagagaggaaaggttggatta
gactattgcaagtatttagtattggatgaggctgacaggatgcttgacatgggatttgaa
ccacagattcgccgtattgtcgagcaggatgcaatgccaccaaaagacgtgaggcaaact
ctgatgttcagtgcaacatttccaaaagagatacagatacttgctcgtgactttcttgat
gaatatatattcttggcagttggtcgtgtgggttccacctctgaaaacataactcagaaa
gtggtatgggtggaggaacaggacaagcgatcattccttttggacctcttgaatgccaca
ggcaaagattcccttacactggtctttgtggagactaagaaaggtgcagattcattggaa
gattttctttatcgtgagggttatgcttgtacaagtatccatggtgaccgttctcagaga
gatagagaagaggctctgcatcagtttcgctctggaagatgccccatcctggttgccact
gcggttgcagcccgtgggcttgacatttctaatgtcaaacatgttatcaattttgatcta
ccaagtgatattgaggagtatgtgcatcgcattggacgaactggtagagttggcaacctt
ggtcttgccacttccttctttaatgagaagaacagcaatattactaaagatcttctggat
ctgcttgtggaagctaagcaagaagtaccatcctggctagaaaacctggcatatgagcaa
cagcataggagctctggtcgtggacgaacaaagagtcggtttggagcaggatttggtgcc
cgagattacaggcagaccagcagcagcttcaatactcgtgggaaccgcagcactggccat
agtggacctagagggtatggaggaggtggttatggaagttattacaatgctgatggatat
ggtggagcttacaactcccaggtggattggtggggaaactga
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