Hemiscyllium ocellatum (epaulette shark): 132821408
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Entry
132821408 CDS
T09720
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03030
DNA replication
hoc03410
Base excision repair
hoc03420
Nucleotide excision repair
hoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132821408 (rfc4)
03410 Base excision repair
132821408 (rfc4)
03420 Nucleotide excision repair
132821408 (rfc4)
03430 Mismatch repair
132821408 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hoc03032
]
132821408 (rfc4)
03036 Chromosome and associated proteins [BR:
hoc03036
]
132821408 (rfc4)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132821408 (rfc4)
DNA replication proteins [BR:
hoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
132821408 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
132821408 (rfc4)
Chromosome and associated proteins [BR:
hoc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
132821408 (rfc4)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
132821408 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
132821408 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_assoc_2
AAA_11
AAA_16
AAA_22
Mg_chelatase
DUF815
SLFN-g3_helicase
AAA_30
AAA_24
AAA_14
RuvB_N
AAA_28
AAA_19
ResIII
AAA_5
VipD-like_C
AAA_7
Motif
Other DBs
NCBI-GeneID:
132821408
NCBI-ProteinID:
XP_060689970
LinkDB
All DBs
Position
13:complement(3853613..3892286)
Genome browser
AA seq
360 aa
AA seq
DB search
MQAFLKGPGVSSSKPAKEKAAAGTSGENKKQKPVPWVEKYRPKCVSEVAFQEEVVAVLKK
SLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLYRKRILELNASDERGIQVVREKVK
RFAQLTVAGSRSDGKPAPPFKIVILDEADSMTNAAQAALRRTMERESKTTRFCLICNYIS
RIIEPLTSRCSKFRFKPLTDDIQLKRLLSICGKESIQCSDETLALLINVSEGDLRKAITY
LQCATRLTAGKGITEQVIIEIAGVVPSEIIDSLLAACHSSSFEKLETVVKNMINEGYAAT
QLINQLHDVIIDKEDLNDQQKSAITLKLAEVDKCLIDGADEYLQMISLSAVIMQQFTQTT
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttttttaaaaggacctggagtgagcagctcaaaaccagcgaaagaaaaagct
gcagcaggaaccagtggagagaacaaaaagcaaaaaccagttccatgggtggagaaatac
cgtccaaaatgtgtctccgaagtggcctttcaggaggaggttgtggctgtgctaaaaaag
tcactcgaaggagcagatcttcccaacttgcttttttatggacctccaggcacagggaaa
acttccacaatacttgctgcagcaagagaactctttggcccagatttataccggaagaga
attcttgagctaaatgcctctgatgaacgtggtatccaggttgttcgagaaaaagtgaaa
aggtttgcacaattgactgtagctggctctcgctcagatggaaagcctgctccgccgttt
aaaattgtcatcttagatgaagccgattccatgacgaatgctgcgcaagctgctcttcgc
cggacgatggaaagagaatcgaaaaccacccgcttctgcctcatctgtaactacatcagc
aggataattgaaccactaacatctcgctgttcaaagttccgttttaaacctttgacagat
gatatacagctgaaaaggttgctgtccatctgtgggaaggagagtatacagtgcagcgat
gaaacccttgctctgcttatcaatgtgtctgaaggagatttgaggaaggcaataacttac
ctgcagtgtgcaacaagactcacagcaggaaaaggcatcacggagcaagtcatcattgaa
attgctggggttgtgccatcggaaataattgacagtttgttagctgcttgccatagcagc
tcctttgaaaaactggaaactgtagtaaaaaatatgataaatgaaggctatgctgcaaca
cagttaatcaatcaactacatgacgtcattattgataaagaggatcttaacgatcaacag
aaatcagcgatcacactaaaactggcagaagttgacaagtgtttaatcgatggtgctgat
gagtatctgcagatgatcagtctttctgcagttattatgcaacagtttacacagaccact
taa
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