Hemiscyllium ocellatum (epaulette shark): 132821747
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Entry
132821747 CDS
T09720
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04382
Cornified envelope formation
hoc04510
Focal adhesion
hoc04512
ECM-receptor interaction
hoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132821747
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132821747
09142 Cell motility
04820 Cytoskeleton in muscle cells
132821747
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132821747
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hoc04147
]
132821747
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132821747
Exosome [BR:
hoc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132821747
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132821747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132821747
NCBI-ProteinID:
XP_060690454
LinkDB
All DBs
Position
13:3277264..3554091
Genome browser
AA seq
1646 aa
AA seq
DB search
MTRLRSALHCTLVILSTVTLAQTACTCSGKSKCHCDGVKGTKGERGFPGAQGPPGIPGFP
GTEGPRGPEGPRGNPGFPGPPGMKGLRGPIGLPGHPGNPAVPGISGKDGPQGPKGIPGCN
GTKGDPGFPGIPGSEGFTGLQGHSGLPGQKGESAQIVPLYPGDKGSRGPPGHPGPPGQPG
LPGQSGPTGPQGPLGPPGPTGHPGPKGNMGLFFVGSKGDKGVKGHPGPVYRPERGPTITV
KGQKGSPGPSGDPGLPGLPGLPGSVTPGWKGDKGERGDPGALGKPGKDGNPGIPGIQGLK
GDPGFLGFPGRIGAPGIKGEVGCQGPPGPQVEDDSCDKGERGDPGATGPKGRPGLQGAAG
QPGLPGEQGISRRGPKGQSGYPGQRGPKGDKGDPGQVYEGPSGPPGFPGPPGPPGPVGPQ
GETISINGQPGPRGLPGPRGFVGFHGPRGYKGDKGDLCVTCRGTSQPGPPGPPGLPGIPG
REALPGPKGISGPSGQFGRTGSPGTPGSPGFRGPPGLDGDPGIGGGQGSKGDKGHCGLQG
NTGRQGKDGIPGQPGPQGPQGIKGDPTPFSLKGDRGPQGVPGNPGIPGAMGPPGSPGFGP
PGIQGLKGNRGVPGFRGVDGVPGEKGDRNNESAVPGPIGIRGETGAPGPVGFPGSSGPPG
RDGSPGPPGEKGETGHSMKGSTGLPGPKGNPGHPGVLGPPGIPGRPGAPGTPGLPGVTGP
KGDGRFGQPGNRGPPGPAGNIGPPGEKGNSGPPGLPGEEGRPGRNGLQGPQGDLGCPGIQ
GPTGPRGQLGKGIPGPAGSEGRPGPPGLQGTTTRGPTGDPGIPGVGIPGIPGAPGSVGMP
GLSGPPGPRGSPGNPGRPGIPGRPGPKGEPGVMGEPGNPGLTGEQGFQGPAGEKGSKGQP
GPKGKKGAIGQIGQKGEKGMKSVTHDITVKGVMGDPGLQGSQGITGPRGETGCPGGPGHK
GKDGAPGPPGPAGPPGDPGLPGNPGNPGFPGALGSTGPMGLPGDKGEKGFAGPPGFSASP
GSDGIPGLKGKKGEPSRLVYGNPGRPGEKGNQGPSASKGQPGTPGSRGKPGTDGPPGNPG
EKGDQGQSGYPGPAGCKGSEGLVGKRGLPGSQGVPGTPGMPGRPGPPGLTGAKGRQGLDG
IPGPHGLKGDPGLPGRGHKGQPGPCGQSGTKGNSGPPGDESEVGPPGPRGDPGRPGPTGL
SGEPGPPGPAGMSIQGPKGNRGPQGAPGPAGPRGLKGLLGQPGPECLKGDKGSSGLSGFQ
GNPGDRGDPGEQGQPGIPGTSAQGPKGERDSTGTPGFPGLQGDKGVKGQTGDAGLSGLPG
QPGPEGLSSVMPTIPLKGDSGLPGPQGPEGQSGTPGSPGPLGCIGSQGPTGSLGRNGPPG
RMGYPGSKGSPGFPGQQGPKGYPGPQGQEGDRGHPGPTGTDIQGFVFTRHSQTTEIPLCP
GNTKQLYIGYSLLYVQGNKRAYGQDLGAAGSCLPRFSVMPFLFCDVNDVCNYASRNDYSY
WLSTSRQMPMDMAPISGKALKPFISRCIVCESPAMVFAVHSQTVQIPPCPRGWKSLWIGY
SFVMHRSSGAEGSGQALASPGSCLEEFRVAPFIECHGRGTCNYYANTYSFWLATLDPSQM
FRKPRPQTLKAGELRSIISRCQVCTK
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggctgaggtcagctctccactgtactctggtcatcctgtctacggtgaccctg
gcacagacggcctgtacatgcagtggtaaatcaaaatgtcactgtgatggagtaaaaggc
actaagggcgaaagaggcttccctggtgcacagggtccacctggaattccaggatttcca
ggtacggagggtcctcgaggtccggaaggtcctaggggaaatcctggatttccaggacct
ccaggcatgaagggtttgaggggacctataggtttaccaggccatccaggaaaccctgct
gtgccaggtatctctggaaaagatggtcctcaaggtccgaagggcataccaggatgcaat
ggcacaaagggtgatcctggttttccaggaattcctggctcagaaggatttacaggactc
caaggacattcagggcttccaggacaaaagggtgaatcagctcaaattgtaccgttatat
ccaggggacaaaggaagccgtggaccaccaggtcacccaggacctccaggtcaaccagga
cttccaggacagtcaggacccactgggcctcaaggtcccttgggtccaccaggaccaact
ggtcatccagggccaaagggcaacatgggattattctttgtgggttccaagggtgacaag
ggtgtgaaaggtcatcctggtcctgtttatcgtccagagcgtggtcctaccatcacagtg
aaaggacagaagggcagtccaggaccctctggagacccaggattgccaggtctcccaggt
ttaccaggctctgtcacacctggatggaagggagataaaggagaacgaggggacccaggg
gccctggggaaaccaggtaaagatgggaatcctggaatcccggggatccagggattgaaa
ggtgatccaggttttttgggatttccaggaagaattggagcacctggaattaaaggggaa
gttggctgtcaaggaccacctggtccacaagttgaagatgattcctgtgacaaaggagaa
cgtggcgatccaggtgctacaggacccaaaggacgaccaggattacaaggtgctgcgggt
cagccaggtttaccaggagagcaaggaatttctagacgtggccccaaaggccaatccgga
tatcctggacaaagaggtcccaaaggggataaaggtgatcctgggcaggtttatgaaggt
ccttcaggtcctcctggatttccaggccctccaggcccaccaggccctgtgggtccacaa
ggcgagactatcagtataaatggccaaccaggacctagagggttaccaggaccaagaggt
tttgttggttttcatggtccacgcggatacaaaggtgataaaggtgacctgtgtgtaaca
tgccgtggaacttcacaacctggtcctcctggtccacccggccttcctgggatacctggc
agggaggcattaccaggcccaaaaggaatttctggtccttcaggtcaatttggaagaaca
ggttccccgggtactccgggatccccaggatttagaggaccaccaggcttggacggtgac
ccaggaatcgggggtggccaaggttcaaaaggggacaaaggtcactgtggtttgcaaggg
aatacaggaaggcaaggaaaggatggaatacctggtcaaccaggaccacaaggaccccaa
ggaattaagggtgacccaacaccattttcactaaaaggtgacagaggtccacagggtgtc
cctggaaaccctggtatcccaggagctatgggccctcctggttcacctggctttgggcct
ccaggtattcaagggctcaaaggaaatcgtggtgtacctggatttcgaggagttgatggt
gtcccaggtgagaaaggagacaggaataatgagtccgcagtcccaggcccaattggcatt
cgtggtgaaacaggagctcctggaccagtgggtttcccaggtagctctggacctccaggt
agagatggttccccaggtcctccaggagaaaagggagaaacaggacactcaatgaaagga
tcaactggtcttccaggtcctaaaggaaacccagggcatcctggagtattgggtcctcca
gggattccaggaaggccgggagcacctggaacaccagggctgccaggagtcactggtcct
aagggtgacggacgttttggacagccaggaaatcgtggtccaccaggtcctgcaggaaac
attggaccaccaggggagaagggtaattcaggtcctcctggattgcctggagaagaaggg
cgtcctggtcgcaatggtcttcaaggtccacaaggtgacctcggatgtcctggtattcag
gggccaacaggcccacgtggacaactgggtaaaggaatacctggacctgcaggttctgaa
ggccggcctggtccacctggtctacaaggaacaacaactagagggcctactggagatcca
ggaattccaggagtgggtattccaggcatccctggtgctcctggatctgttggaatgcca
ggcttgtcaggccctcctggaccaagaggttctccagggaatccaggtcgaccaggaata
ccagggagaccaggtccaaaaggtgaacctggtgttatgggagagccagggaatccaggc
ctcactggtgaacaaggatttcaaggccccgcaggagagaaaggttctaaaggtcaacca
ggaccaaagggtaaaaaaggtgcaattggtcagataggtcaaaaaggtgaaaaaggaatg
aaatcagttacgcatgatataacagtaaaaggtgtcatgggagaccctgggctacaaggt
tcgcaaggaataacgggaccaagaggtgagactggttgccctggtgggccaggtcacaaa
ggtaaagatggagcaccaggacctccaggtccagcaggtccaccaggtgatccaggatta
ccaggtaatccaggcaatccagggtttcctggagctcttgggtctactggtccaatgggc
ttgccaggtgacaaaggagaaaaaggatttgcaggaccaccagggttttcagcttcacct
ggttctgacggtatccctggcctaaagggaaagaaaggagaaccaagcagactagtatat
ggcaacccaggccgtccaggagaaaagggtaatcaaggtccttcggcctctaaaggacaa
cctggtactcctggatctcgaggtaaaccaggaactgacggtcctcctgggaaccctggt
gagaaaggcgaccagggccaatcaggttatccaggtcctgcaggctgtaaaggcagtgaa
ggacttgttgggaaacgaggtttgccaggaagtcaaggtgtcccaggaaccccaggaatg
ccaggacgccctggtccaccaggattaacaggtgcaaagggcaggcaaggacttgatggc
attccaggacctcatggactgaagggagatccaggtttacctggaagaggacataaaggc
caaccaggcccatgtggacaatcaggtaccaaaggaaattcggggcctcctggtgatgag
agcgaagtaggtcctcctggtccacgaggtgaccctggtcgtcctgggcctactggtctc
tctggtgaacctggcccgcctggtcctgcaggaatgagtattcaaggtcccaaaggaaac
agagggcctcaaggcgctcctgggcccgcaggtcctcgtggactgaagggattacttgga
cagccaggaccagaatgtctgaagggggataaaggatcatctggtctctcaggatttcaa
ggcaacccaggtgacaggggtgatccaggtgaacaaggacaaccaggaattccaggcaca
tcagctcaaggtcccaaaggagagagggattcaactggaactcctgggttcccaggttta
caaggtgacaaaggagtcaaaggccagactggagatgcaggattgtcaggattgcctgga
caaccaggtccagaagggttgtcatctgttatgccaacaatacctctaaagggcgattcc
ggactcccgggtccacaggggcctgaaggacaaagtggaactcctggatctcctggacca
cttggatgcatcggtagccaaggtccaactggttcacttggtcgtaatgggcctcctggt
cgtatgggatatccaggatcaaagggctcaccaggatttcctggacaacaaggaccaaag
ggctatccaggtccccagggacaggaaggagacaggggtcaccctggaccaacaggaaca
gatatccaaggttttgtttttacacgtcatagtcaaactacagagatacctttgtgccca
ggcaacactaaacagctatacattggttattctctcctctacgtgcaaggtaacaaacgt
gcatatggacaagatttaggagctgctgggagttgcttgccaagattcagtgtcatgcca
tttttgttctgtgatgtaaatgatgtctgtaactatgcatcaagaaatgactattcttat
tggctatcaacttcaagacaaatgccaatggatatggctccaatcagtggaaaagcgctg
aaaccatttataagcagatgtattgtttgtgaaagtcctgcaatggtctttgctgttcat
agtcaaactgttcagatcccaccatgcccaaggggctggaagtctttgtggataggctat
tcttttgtaatgcacagaagctcaggtgcagagggatcaggccaagcactggcttcacct
ggctcctgtttagaagaatttcgcgttgccccctttattgagtgtcatggaaggggaaca
tgcaactattatgcaaatacctacagtttttggctggcgacgttagatccctcacagatg
ttcaggaaacccagaccacaaacgctaaaggcaggagaattacgatccataataagccgc
tgtcaagtctgtacaaagtaa
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integrated database retrieval system
