Hemiscyllium ocellatum (epaulette shark): 132821759
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Entry
132821759 CDS
T09720
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03008
Ribosome biogenesis in eukaryotes
hoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132821759 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
132821759 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132821759 (xrn1)
03009 Ribosome biogenesis [BR:
hoc03009
]
132821759 (xrn1)
03016 Transfer RNA biogenesis [BR:
hoc03016
]
132821759 (xrn1)
03036 Chromosome and associated proteins [BR:
hoc03036
]
132821759 (xrn1)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132821759 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
132821759 (xrn1)
Ribosome biogenesis [BR:
hoc03009
]
Eukaryotic type
Pre-60S particles
RNases
132821759 (xrn1)
Transfer RNA biogenesis [BR:
hoc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
132821759 (xrn1)
Chromosome and associated proteins [BR:
hoc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132821759 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
132821759
NCBI-ProteinID:
XP_060690490
LinkDB
All DBs
Position
13:complement(6127311..6250130)
Genome browser
AA seq
1834 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
IADIFHYVEVLFRIIKPKKIFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
TLPTEARFDSNCITPGTAFMARLHEQLKYFINLKISIDKSWEGVAVYLSGHETPGEGEHK
IMEFIRAETRKPDHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGRKSQKRIT
AVEETTFHLLHLSLMREYIDYEFSSVRDKICFEYDIERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYTEVLPSLGGYINEGGTLNLEHFEKYLVKLSEFDREHFSEVFVDLK
WFESKVGKKYLNEAAGIAAEEAKRRKKKNKVREDMCLAVLDESGNETTASSNHKTEFSHD
ELLEDNKDDDNEDENDLFETEFRQYKRVYYMTKMGVEVVSDEFLAQQAECYVQAIQWILH
YYYHGVQSWSWYYPFHYAPYLSDIRHISKLKIKFDIGKPFKPFEQLLAVLPAASKDLLPN
CYQFLMTDEASPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLTAMEPCNSDLSEE
EKQRNRHSNCVKFWWDEKIVFKYSSPWPEKFPDVEQCHARHEEIPMDAWKVDLKCTKKHV
TEKGSLYFCGFPTLRHIKHKFYLVKSGVQVFQQPSRGENMLLELLPTEGEFQNVDDVANQ
ELGRSVYLNWPYLEEARVVAVSDQEMKYYLEEPAGVQKVYTEKSPPPTKVVYLGGTEQSM
WHKEVHNVTEFYHKRKGILINETSVLVYAQLLTGRRYVFGHDGEVTLEKEWSKQVLPFAH
QTIVRNLKSFDSSFSHFSSLDELFPPRIKVFMMGTPYYGCMGEVQDSSDVVKDGRIRVVF
TVPCEPQLDGIIQNQHKYSTKYNPGYVLASRLGVTGYLVSRLTGSLFIGRGSKQNPLGEQ
KINVGLNLKFNKKNEEVPGYTKKVGNEWQYSSAVEEILNEYLERFPELISYIANNSQEDL
YYEDNIWSGEDINGAEKVQEIGAWLKMHPVSSLSRASCDLNLLDAAIIEKIEEEVERCKQ
RRSNKKVRVTVKPHLLYRPLEQQHGIVPDKDAEYLLFDRVVNVREDFSVPVGLRGTIIGM
KGAERESDESFEVLFDEEFPSGLTIRCSPGRGYRLPKCALINLSYGNRLEFGGQKATTLL
KPQPAPIPQHAVYPSSQSGAQKVSTGGLNHSPRSLFVPTQQLSGRQLYLRAENQKNHVNH
QKANGPSNFHQNVENQHQGGFAKLPEDEFSTVWQSLHSNFGTTPHSIQSNSRTTDLPSKH
SSALQEKAVTEPASISGFQFKNPHLTENKMRPFKIDVQQKQKWGSSEQQACTRKAKEDNS
ESFKARTHGPENFGQTQLSVSKLQSNQACASNSKPSMKILRRNEDSKEQKSALINCQQSA
SLERNKVPSEFEEPLVSVKCPGEQVGEDVQGSQSKESERITGEPLSPQSFAMKGTQMLKE
ILKIDGASAAPQKETNISSNIKQESSPMSTVLREKPGYTPHQRPVKKLAAQMNKPHGLQS
GELSGHYQGRQQPPLSTSVAELITICARIGLPHPDFSFIKSPQGLTVCQVKLANGLLVHG
PQCQSDSEAQEKAAAFALQRLHATGQNVPLPPNMFSGYQPVTGAVPPPIIPPSFGQTPGG
MMSTAPNGYGPMPWTTLIPPPLYNSFQIPYSGNICPGGVLIGTHNQFVPLQVTKRRTSFN
KTHDDKDYNHSVQQKFSQPPPMMDFSNTSSHGYPSASTSRNFFQPGRTTLEPQNKAIVQT
PVQPQGQQRPMAGSTGKRKHRKLAVNFGASRLPQ
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccccaagttttaccgctggataagcgaacggtatccgtgcctgagccaagtg
gtgaaggagcatcagattccggaattcgacaatctctatctggatatgaatggaattatt
catcaatgttctcacccaaatgatgaagatgtgcactttcgaatctctgaagaaaaaatt
atcgctgatattttccactatgtggaagtcttatttcgcatcatcaaaccaaagaagatc
ttcttcatggcagttgatggtgtggctccaagagcaaaaatgaatcaacaacgtggcaga
cgttttagatcagcaaaagaagcagaagagaaaattaaaaaagcattagagaaaggagaa
acccttccaacagaagccagatttgactccaactgtatcaccccaggtactgctttcatg
gccagattacatgagcaattaaagtattttataaacttgaagatttcaatagataaatcc
tgggaaggtgtggctgtgtacctgtcgggtcatgagaccccaggcgagggagaacacaaa
attatggaatttattagagctgaaacaagaaaacctgatcatgatcccaatacaagacac
tgtctatatggactggatgctgatttaattatgcttggattaacaagccatgaaccaaat
ttttcccttttgagggaagaagttcgatttggtggcagaaaatcacagaaaaggattact
gccgttgaagaaactacgtttcacttgttgcacctttccctaatgagagagtacattgac
tatgagttttcatctgtacgggacaagatttgttttgaatatgacattgagagaataatt
gatgactggatattgatggggtttcttgttggtaatgattttattcctcatctacctcat
ttacacatcaatcatgatgcactgcctttgctatacaagacgtacactgaggtcctacca
agtcttggaggatatattaacgaaggtggaacattaaatttggaacactttgagaagtat
cttgtaaaactgtcagagtttgatcgtgagcattttagtgaagtttttgtggacttaaag
tggtttgaaagtaaagtgggtaaaaaatacctaaatgaggcagcaggcattgcagcggag
gaagcaaaacgacgtaaaaagaaaaacaaggttcgtgaagacatgtgtttagctgtatta
gatgaaagtggaaatgagacaacagccagttcaaaccacaagactgaattcagtcacgat
gagctattggaggacaacaaagatgatgacaatgaagatgagaatgatttgtttgaaaca
gaattcaggcaatacaagagagtttattacatgacgaagatgggtgtagaagttgtttct
gatgaatttctcgctcagcaagcagaatgttatgttcaagcaatacaatggattttgcac
tattattaccatggtgtgcagtcctggagctggtactatccttttcattatgcaccttac
ctatctgacatccgtcatatcagcaagttgaagataaagtttgatatagggaaaccattc
aagccatttgagcagcttctggctgttcttccagcagccagcaaagatctactacccaac
tgctatcagtttttaatgactgatgaagcttcaccaatcattgagtactatcctccagat
ttcaaaaccgaccttaatggcaaacaacaggagtgggaagcggttgttctgattccattt
attgatgagaaacgattactgacagcaatggaaccttgtaatagtgatctttcagaggaa
gaaaaacaacgtaatagacacagtaattgtgtcaagttttggtgggatgaaaaaattgtc
ttcaaatattcatcaccatggccagaaaaatttccagatgtggagcagtgtcatgcaaga
catgaagagattcccatggatgcatggaaagtagatctcaagtgcactaagaagcatgtc
acagagaagggatctttatacttctgtgggtttccaactctgagacatattaagcataag
ttctacttagtgaaaagtggagttcaagtcttccaacagccaagtcgtggagaaaatatg
cttttggagttattgcctacggaaggggaatttcagaatgtggatgatgttgctaaccag
gagcttggaaggtctgtttatttgaattggccttatcttgaggaagctcgagttgttgct
gtgtcagatcaagaaatgaaatattatttagaagaacctgcaggtgttcagaaggtatac
actgaaaaatctccgccacctactaaagtggtttaccttggaggcactgaacaaagcatg
tggcacaaagaagtacataatgtaactgaattttaccacaaaaggaaaggaatcctcatc
aatgaaacgtcggtgcttgtgtatgcacagcttctcactgggcgtcgatacgtatttggc
catgatggtgaagttaccttagagaaggaatggtcaaagcaagtactaccatttgctcac
cagaccattgtgaggaaccttaaatcatttgattccagtttctctcacttcagttcattg
gacgaattgtttccaccccggattaaggtgttcatgatgggaacaccctactatggctgt
atgggagaggttcaagactcttctgatgttgtgaaagatggccgaatccgtgtggttttc
actgttccatgtgagccacagctagatggaatcatacaaaaccagcacaaatattccaca
aaatataaccctggatacgttttggccagtcgacttggagttactgggtatcttgtttca
aggttaacaggaagtttatttattgggagaggatcaaagcaaaatcctcttggagagcag
aaaataaatgttggcctgaatctgaagtttaataaaaagaatgaagaagtacctggttat
acaaaaaaagttgggaatgaatggcagtattcttctgcagttgaagaaattctgaatgaa
tacctagaaagattcccagaattaataagctacattgccaacaacagtcaagaagatttg
tactatgaggataacatttggtctggagaggatataaatggcgctgagaaagttcaagaa
attggagcctggttgaaaatgcatcctgtcagtagtctatcaagagcatcatgtgacttg
aacctacttgatgcagcaattattgaaaagattgaagaagaggtggaaagatgcaagcaa
agaagaagtaacaagaaagtaagagtgactgtgaaaccacatttgttataccggcctctg
gagcagcagcatggtatagtgccagacaaagatgcagagtaccttttatttgatcgtgtt
gtgaatgtgagggaggacttctctgttcctgttggtcttcgaggaaccatcataggaatg
aaaggagctgagagagaatctgatgaatcttttgaagtgttattcgatgaggaatttcca
agtggacttactataagatgctctcctggcagaggttatagactcccaaagtgtgcctta
atcaatctcagttatgggaaccgcctggagtttggaggccagaaagcaacaacattattg
aagcctcaaccagcacctatacctcaacatgctgtgtatccttcctcacagtctggtgct
cagaaagtgtcaacaggaggcctgaaccactccccacgctccctctttgtaccaacacag
cagctgagtggaagacaactatacctcagggcagaaaatcagaagaatcatgttaaccat
caaaaagcaaatggaccatctaattttcatcaaaatgttgaaaaccagcaccaaggagga
tttgctaagctgccagaagacgaattctccactgtatggcagtccttgcatagcaatttt
ggaactactccacactccatacagagcaattcccgcactacagatttacccagtaaacac
tcttcggctttgcaagaaaaggctgtgactgagccagcatctatttcagggtttcagttc
aaaaatccccatctaacagaaaataaaatgcgaccattcaaaatcgatgtccagcagaaa
cagaaatggggatcatcagagcagcaggcatgtaccagaaaagcaaaagaggataactct
gaaagtttcaaggccagaactcacggacctgaaaactttggccagacacagctatctgtt
tccaaactacaaagtaatcaggcatgtgctagcaatagtaaaccaagtatgaagattcta
agacggaatgaagactcaaaagaacagaaatctgcattaataaattgtcaacagtctgca
tcattagaaaggaataaggtaccatccgagtttgaggaaccattagtttctgtaaaatgc
cctggtgaacaagttggagaagatgtacaaggctcacagtccaaagaaagtgagagaatc
actggagaacctctatccccacaatcttttgccatgaaaggaacacagatgttgaaggaa
attctgaagatcgatggtgcaagtgcagcccctcagaaagaaacaaatatatcctccaat
attaagcaagagagctctccgatgtccactgtccttcgtgagaaaccaggatacacccca
caccaacgtccagtgaaaaaacttgctgcacaaatgaacaaacctcacggtttgcagagt
ggagaactgtcagggcattatcaaggacgacagcaacctcctttatccacttcagtggcc
gagttgatcaccatttgtgctagaattggtctaccacatccagattttagcttcatcaag
agcccacagggcctgactgtttgtcaagtaaagttagcaaatggtttgcttgtgcacgga
cctcaatgccagtcagacagtgaagcacaggaaaaggctgcagcgtttgcattacaacga
ttgcatgccacgggacaaaatgttcccctccctccaaatatgttttccggttatcaacca
gtcacaggagctgtaccaccacctatcattccaccatcctttggtcagacccctggcggt
atgatgtccacagctcctaatggatatggtcctatgccttggacaactttgattcctccc
ccactgtacaatagctttcagatcccatattcaggaaacatctgtcctggaggagtgctt
attggtactcacaatcaatttgtgcctttgcaggtgaccaagaggaggaccagctttaat
aaaacacatgatgacaaggactataatcattcagttcagcaaaaattcagtcaaccacca
cccatgatggacttttcaaatacatcatcacatgggtatccttctgctagcacctcaaga
aatttttttcagcctggtcgaacaacccttgaaccccagaataaagcaattgtacagacc
cctgttcaaccccaagggcagcaaaggccaatggcaggttcaactggtaaacgcaagcac
aggaaactggcagtcaattttggagcatcccgcctgccacagtag
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integrated database retrieval system
