Hemiscyllium ocellatum (epaulette shark): 132822938
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Entry
132822938 CDS
T09720
Name
(RefSeq) collagen alpha-1(XX) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hoc00535
]
132822938
Proteoglycans [BR:
hoc00535
]
Extracellular matrix (ECM) proteoglycans
Others
132822938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
NDNF
Motif
Other DBs
NCBI-GeneID:
132822938
NCBI-ProteinID:
XP_060692345
LinkDB
All DBs
Position
15:complement(35301741..35518124)
Genome browser
AA seq
1861 aa
AA seq
DB search
MTVEKSCVLTSVIMLLHLISQAEGQGRLKLTVLSEDRLQMKWKEVDGNRQGYKVRVKPSA
GTLDREIILKTNIAKATVVGLSPTQEYTLQILLLNGTREHHYAKRKFILNVLKQQHLEKV
LKRKQDKKKIIGIAGENGTQLDFSFSESNSTELHQIETLHGLQSKRVKGPERKKSSDKTM
ENKMKGRLSITANESGRISQVKNTTQTLPKNKRKMVQDKRKEEPVFEEFPAKGSQFKCQL
STAADIIILIDGSWSIGRVNFRLVRQFLINLITPFHVDMNGIRIGLTQYSGEPRTEWDLN
TYSSTNEVLEAVQKIRYKGGNTYTALALNHIFKNTLKPSAGARPKTAKYLILLTDGKSQD
DVNSSAQSLKNAGVEIFAIGVKNADEAELKQIASDPLELHVYNVLEFSLLDSLSNRLTKI
LCGQIKTKAIKVKSENEKPDSGTILYPTPTNLVISDVTARSFKVSWTHGPKKAKQYRVVY
YPTKGEIPQEVIVDGTVSSVILENLHSLTEYQLAVFPIYEDFVGEGLRGIGNTSSFPSLN
NLTIYDVTHDSMRIKWDPQAGATQYMILYEQVSNDGMDDGKEVRVDAQSTDIEIEGLSAS
AEYVVTAYALYGEETSEPVTAQQATFSLQAPANVHLTELRHSSVKVNWETASRKVRGHRI
TYVAANGNDPKQVEVAGDVENVLLKNLTSLTKYVIAVLSIYDTGTSLPVTITGETIKVPP
PSDLKVTEFLGTNLTIMWKHAASDVVLYKIKWIPLSGGKLKELDVKGNMDTTVLQGLEKN
VEYQVSLSALYNDTAKSNAIVLRYNTFSRDPPSNLLIETKTPTSLQISWSHPSANVQHYK
ISYMDVKGGHVREMVVPVKRNNIIIQPLTADTVYEVTVTAVYTSGDDASISREGKTLPFN
PPTNLRISEVWYNHFRVMWDKADTQPLGYAVIYQAAPDQTMEVMTGEDADSIVIKNLQPG
LEYNVEVFAVYPNGNSTTVTGKATTLYLNVTDLHTYQVQLTSMCAKWEGHPQSSTFRIVL
ESMKDGKIQENTLHAGQDTCCFRLLFPNTLYKITVYPRLQDMEGPAASVLQSTLPLPTRS
TFVSSTVPVTFKACHDITADLNFILDGSRSVGGMNFKKIIAFLYDSISVFDKIGPDGIQV
SVNQFNDRMRNEIQYGSFGSKEKLLGAIYDIPYRGTDSNTVKGSRPSNDPFSKEETLRRR
GVHKILIVITRGTVLGEIHQMLQELGLKGFFTFILGVDDADEAKINEIALTPSMRTIWHV
NDFDGLSAVGNKFISSICQIVSTTCPLTNIKDTVVPGINMMEAFGLDVREYSELEGVSMQ
FDIFTGLPSYIIFENAQLTQTTRNIHPTGLPPEYTITLLFRLLHNTPKEPYAIWQIVDED
FQPLVGVVLNCNQQTLKYFHLDYKSELQEVTFNQPQVKKVFFGSFHKVHIAVSRTTVKLY
IDCKEIGEKSMNVLGKISTQGFEILGKLVNTKGPGSQSVPFQLQAFEMVCNTSWADMDNC
CDLPALRDEVTCPPLIHACTCSSSVQRRPGSLGLPGPPGLRGAQGERGEPGSRGPEGPIG
NPGPRGSEGQPGPPGPRGLSIRGPSGPPGEKGQKGDPGQRNSQGPPGPPGPPGAEGLQGP
KGTRGLEGAMGPPGLPGPRGPPGITGPSGYPGDRGSPGKVGPSGLPGAKGEKGEKGELQP
LATVYQLVTQACEELVQNHMMKFDSILTEFTRNPAPVRIIQGPAGEIGRPGKPGPPGSRG
PPGIPGMPGDDGKAGYPGEIGKPGDKGEKGSPGVSAPGSEGPRGSPGSQGEGKRGKQGPQ
GLPGPPGRPGLPGLPGTTGPPGPTGHCDVSTCSTFNPGGESEFESEVESEFESDGELQYL
P
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtagaaaagagctgtgttcttacctctgtaatcatgctgcttcatctgatcagt
caagcagagggacaagggaggttgaaattaactgttctgtctgaagatagactgcagatg
aaatggaaagaggttgatggaaacagacaggggtataaagtacgagtaaaaccatctgca
ggtaccttagaccgggaaataatcttgaagacaaatatagcaaaagcaacggttgttggc
ctttctcccactcaagagtacacactgcaaatattactattaaatggaacacgggaacat
cactatgccaaaaggaaattcattttaaatgttctgaaacaacaacatttagaaaaagtt
ctcaaacgtaaacaagacaaaaagaagattataggtatagcaggagagaatgggactcaa
ttggactttagtttctctgaaagcaattcaacagagttgcatcaaatagaaacattgcat
ggactgcaatcaaaaagagtgaaaggtccagaacggaaaaaatcatctgataaaacgatg
gagaataaaatgaaagggagattgagcatcactgcaaatgaaagtggaagaatatcgcag
gtgaaaaatacaacacaaactttgcctaaaaataaaagaaaaatggtccaagacaaacga
aaggaagaaccggtgtttgaagaatttcctgccaagggatctcagttcaagtgccagttg
agtactgctgctgatatcataattctaatcgatggatcctggagtattggcagagtaaac
ttccgattggtgcgtcagtttttgataaacttaattacaccttttcatgttgatatgaat
ggaattagaattggattaactcagtacagtggtgaaccgaggacagagtgggacctgaat
acttactcaagcacaaatgaggtgctagaagcagttcaaaaaatacgctacaagggaggc
aatacgtacacagctcttgccttgaatcatattttcaaaaacaccctaaaaccttcagct
ggcgctagaccaaaaacagcaaaatatttgattctgcttaccgatgggaagtcacaggat
gatgtcaactcatcagcacaaagcctgaagaatgctggtgttgaaatatttgcgattggt
gtaaaaaatgcagatgaagctgagctgaaacaaattgcgtcagatccacttgaacttcat
gtgtacaatgtacttgagtttagtcttcttgactcacttagtaaccgactcacaaagatc
ctttgtggacagatcaagacaaaggcaatcaaagtgaaaagtgaaaatgagaagccagac
agtggtaccattttatacccaactccgacaaatctggttatttctgatgtaacagccaga
agtttcaaggtcagctggacacatggaccaaagaaagcaaaacagtaccgtgttgtttat
tatccaactaaaggagaaataccacaagaggtgatcgtggatggaacagtttcatctgta
attctggagaatttacactctctcactgaatatcaactggcagtatttcctatctatgag
gattttgttggtgaaggtctccggggcattggaaatacatcatcttttccatcactgaat
aatcttacaatctatgatgtcacacatgacagtatgagaattaaatgggatcctcaagca
ggagccactcagtatatgatcctgtatgagcaagtttctaatgatggaatggatgatgga
aaagaggtgagagttgatgctcaatccacagatattgaaatagaaggtctctctgcaagc
gcagagtacgttgtaacagcttatgctttatatggagaggaaacaagtgaaccagtaact
gcacagcaagcaacattttcacttcaagccccagcaaatgtgcacctcactgaacttcgt
cacagtagtgttaaagtaaactgggagacagcttcaaggaaagtgagaggtcatcgtatc
acttatgtggcagccaatgggaatgatcccaaacaggttgaagttgctggggatgttgaa
aacgtgctactgaaaaatctaacttcattgacaaaatatgtaatcgctgtactttctatt
tatgacactgggacctctttgcctgttacaattactggagaaacaatcaaggttccacct
ccatcagatctgaaagttactgagtttttaggcaccaatttaacgattatgtggaaacac
gctgccagtgatgttgttctgtacaaaataaaatggattccccttagcggaggaaaatta
aaagagcttgatgtcaaaggaaatatggacacaacagtgttacaaggtctagagaagaac
gtcgaatatcaagtatcgctgtctgcactatacaatgacacagcaaaaagcaatgctatt
gttctccgctataacacattttccagagatccaccatcaaaccttctcatcgaaaccaag
acaccgaccagcctccaaatcagctggagtcatccaagtgcaaatgttcaacattacaag
atatcatatatggatgtcaaaggtggccacgtgagggaaatggtcgtacctgttaagaga
aacaacatcataatacagccactaactgcagacactgtgtatgaggtcacagtcactgcc
gtctatacttcaggtgatgatgccagtatatccagagagggcaaaaccttaccatttaat
ccaccaactaacctgcgtatctcagaagtttggtacaatcatttccgagttatgtgggat
aaagctgacacacaaccactaggatatgctgtgatttatcaggcagctcctgatcaaacc
atggaagtgatgacaggagaggatgcagattcaatagtaattaagaatctgcagcctggc
ctagaatataatgttgaagtatttgcagtctatccaaatggcaacagcacaactgttaca
ggaaaagctacaactttgtacttgaatgtaactgatcttcatacatatcaggtccagttg
accagcatgtgtgctaagtgggaaggacaccctcaatcctcaactttcaggattgtctta
gagtccatgaaagatggaaagatacaggaaaatactttgcatgcaggccaagacacatgt
tgtttcagactactctttcccaatactctgtacaagattacggtgtacccacgcctacaa
gatatggagggacctgctgcttcagttcttcaatccacattgccacttccgacaagatct
acatttgtttcaagtactgttcctgtgaccttcaaagcttgccatgatattacagccgat
ttaaactttatactcgatggatccaggtctgtaggaggaatgaatttcaagaagatcatt
gcatttttgtacgatagcattagtgtttttgacaaaattggcccagacggaatacaggtg
tcagtgaatcagtttaatgatcgcatgaggaatgaaattcagtatggctcctttggcagt
aaagagaagttactgggagcaatctatgacataccttacagaggaactgattctaataca
gtcaagggtagcagaccatccaatgatcctttttccaaagaagaaacactgaggaggcga
ggtgttcacaaaattttgatcgtgatcactcgtgggaccgtactgggtgaaatacatcaa
atgctgcaggagttaggattgaaaggcttctttacctttattcttggcgtcgatgatgct
gatgaggcgaaaattaatgaaattgcactcacacctagcatgagaactatatggcatgta
aatgattttgatggtttaagtgctgttggaaacaaatttatctcatccatttgtcagatt
gtctctacaacatgtcccttaacaaatattaaggacactgtcgtgccaggaattaacatg
atggaggcatttggcttagatgtcagggaatattcagaacttgaaggagtttctatgcag
tttgacatctttacaggcttaccatcatatatcatttttgaaaatgcgcagcttacacag
accaccaggaatatccatcccacaggactacctccagagtacacaattacattgcttttc
cgattactgcataatactccaaaagaaccatatgccatctggcagattgtagatgaagat
tttcagcctcttgttggagtggtgcttaactgtaaccaacaaactctgaagtactttcat
cttgattataagagtgaattacaggaagttacttttaaccaaccccaagttaaaaaagtt
ttctttggaagttttcataaggtccatatagcagtgagtaggacaacggtcaaactttat
attgactgcaaggagattggagagaaatccatgaatgttcttgggaaaatctccacacaa
ggttttgagattctagggaaactggtaaatacgaagggccctggcagtcaatcagtgcca
tttcagttacaagcatttgaaatggtttgtaatacatcatgggctgacatggacaactgc
tgtgatctacctgcactgagagatgaagtgacatgtcctcctcttatccatgcttgtact
tgttcatcatctgtccaaagacgacctgggtctttaggactcccaggtcctcctggttta
agaggagcccagggtgagcgtggggaaccaggatctcggggtccagaaggtccaattggt
aatccagggcctagggggtcagaaggccaaccaggacctccaggaccaagaggactcagt
atccgtggaccttcaggtcctcctggtgaaaaaggtcagaaaggtgaccctggacaaagg
aatagccagggtcctccgggtcctccaggtcctccaggggctgaaggccttcaaggacca
aagggtacaagaggactggaaggtgcaatgggacccccaggacttcctggaccaaggggg
ccacctggtatcacagggccatcaggttatccaggggaccgaggttcaccaggaaaagtg
ggaccatcaggtctccctggtgcaaaaggagaaaaaggtgaaaagggagaacttcagccg
cttgctacagtttatcagctggttacccaagcctgtgaggagcttgttcagaatcatatg
atgaaatttgattcgattctgactgagtttacaaggaacccagcacctgtccgaatcata
caggggccagcaggagaaatagggcgcccagggaaaccaggaccaccaggaagcagaggg
cctcctggaataccaggcatgccaggagatgatggcaaggctggatacccaggagaaata
ggtaaaccaggtgataaaggagagaaaggtagcccaggagtcagtgctccagggtctgag
ggaccaagagggtctccaggttctcaaggtgaaggaaaacgtggaaaacaaggtcctcag
ggcttgcctggcccaccaggccgtcctgggctaccaggtcttcctggaaccactgggcca
ccaggtcccacaggacattgtgatgtctctacctgcagcacattcaacccaggaggagaa
tcagaatttgaatctgaggttgaatcagaatttgaatctgacggtgaattgcaatacctg
ccttaa
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