Hemiscyllium ocellatum (epaulette shark): 132823466
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Entry
132823466 CDS
T09720
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03440
Homologous recombination
hoc03450
Non-homologous end-joining
hoc04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132823466 (rad50)
03450 Non-homologous end-joining
132823466 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
132823466 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hoc03032
]
132823466 (rad50)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132823466 (rad50)
DNA replication proteins [BR:
hoc03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
132823466 (rad50)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
132823466 (rad50)
BRCA1-C complex
132823466 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
132823466 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
AAA_24
AAA_16
Motif
Other DBs
NCBI-GeneID:
132823466
NCBI-ProteinID:
XP_060693346
LinkDB
All DBs
Position
16:complement(70776068..70933723)
Genome browser
AA seq
1356 aa
AA seq
DB search
MDLTRCIDFNVLKNAKVHHDQFITCGAASFIYEIRSDRKLKTARMSKIEKMSIQGVRSFG
IDDKSKQVIAFYTPLTVLVGPNGAGKTTIIECLKYICTGDFPPGTKGQTFVHDPKVAHET
DVRAQIRLQFRDVNGGVVAVQRSMLCTQKGKKTEFKTLEGVITRMKHGEKVSLSSKCAEM
DREMISALGVSKAVLNNVIFCHQEESNWPLSEGKALKQKFDEIFSATRYIKALETLRQVR
LKQTQSIREYQAELKYLKQNKEKAHTIRGQLEDKETQLAASKENVRAIENQIAPLEEHLS
QIDQNLGKVMKLDNDIKALESRRKQMEEDNHELEEKMEQLFQGTDEQLRDKYLNHQRTVI
EKERLLTDRQRELDRVNLRCQKLNRQKSEMLVEQGRLQLQADRQQENIKKRDSLVHSLAR
HLELDGYERAPFSDRQYNSFCRQIAARLDSEEESARQLMGEYAAKEATKQRQIDELRDTK
TGLERTIELKSGIQRKRQDELKNVKLELQQLEGSSTRLQELDQELNKAEHDLDRAERGSK
VESLKAELVNLLNEKGALDKSLRKLDQEMEMLNLHTTARTQMEMLKKDKADKEEQIRKIK
SRRNEELVLLLGHFPNKRQLEDWLHTKATEINQTRDKLFKMNKDLASADQNKNHTSTALK
TKEQQLSTYEEKLFDLCGGQDFESDLYKLQDDIEKASKQRAMLSGATAVYSQFISQLTEE
TEPCCPVCQRVFPSEAELQDIINDLQSKLRLVPDKLKSAESELKKKEKRRDEMMGLKPIR
ETVIELKEKDLPELRNKLQIINRDIQHLKKDVEEQETLLAAFLSEEGTAKACLQDISLME
RYQMELKDVERKIAQQAAKLQGIDVNRTMQQVNQEKQEMQLQVETVCNKIELKRKMIQDH
QEQIQLLKSIVNEVRAEKLQIASNMQRRQQLEEQSAEFSTEVQSLHREIKESKEQLPPLA
AALDKLQQEKQDLIERKNMSYKEIQDKINEIKEKIKNIDVYAREIEKYIKDRRDEHKEQK
ESELQDTITQLSEAEKQRDKIHKDMEATRKDIDTQKLEERWLQDNLTLRKRMEELNVVES
KRKELLKEMGEMKVMHLRNERKQLEERLDDFKKNRNLAQGRQKGFEEEILHFRKELREPQ
YRDAEEKFREMMIVMRTTELANKDLDIYYKALDQAIMRFHSMKMEEINKIIRDLWRSTYR
GQDIEYIEIRSDADENVSASDKRRNYNYRVVMVKGDTALDMRGRYSAGQKVLASLIIRLA
LAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKCRSNQRNFQLLVITHDEDFVEL
LSRSQYIESFYRVKKNIDQCSEIVKCSVSSLNTHGP
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggatttgacacgatgcatcgattttaacgtccttaaaaatgccaaagtacatcatgac
caattcatcacttgtggtgctgcatcatttatttacgagatcagaagtgatagaaaattg
aagaccgccaggatgtctaaaattgagaagatgagtattcaaggtgtgaggagctttggg
atagatgacaagagcaagcaggttatcgctttctacactccattaactgttctggtggga
ccaaatggcgctggcaaaacgacaataatcgagtgcctgaagtatatttgtacaggtgac
ttccctcctggaactaaaggacaaacgtttgtgcatgacccaaaggttgcccatgagact
gatgtgcgagcacaaatccgcctacaatttcgagatgtgaatggaggagttgtggctgtg
cagaggtcaatgctttgcacgcaaaaaggaaaaaagactgagtttaaaaccctggaggga
gtgatcacacgaatgaagcatggggagaaggtcagcttgagctcaaaatgtgcagagatg
gaccgtgagatgatcagtgcattgggtgtctcgaaagctgtgttaaacaatgtcattttc
tgtcatcaagaagagtcaaactggcctttgagtgaaggaaaagctctgaaacagaaattt
gatgaaattttctcagccaccagatacattaaagccctggaaacattacggcaagtccgt
ctgaaacagacacagtcaatccgggagtaccaagcagagctcaagtacctgaaacagaac
aaagagaaagcccacacgattcggggtcaactggaagacaaagaaacccagctggctgct
tcgaaggagaatgtccgcgcgattgaaaatcagattgcccctttggaggaacacttgtct
caaattgaccagaacctgggtaaagtgatgaagcttgacaatgacatcaaagcccttgaa
agcaggagaaaacaaatggaggaggacaaccatgaactggaggagaaaatggagcagctt
ttccagggaactgatgagcagcttcgggacaagtacctcaatcaccagaggactgtgatt
gaaaaagagagactactgactgatcgtcagcgtgaacttgatcgggtaaacctgagatgc
cagaaactcaaccgccagaagtcagagatgctggttgaacagggacgacttcagctccag
gcagatcggcagcaggagaacatcaaaaaacgcgattctttagtccactctctagcaagg
catcttgaactggatggttatgaaagggcaccattcagcgatcgccagtataatagtttc
tgtcgtcaaatcgcagctagattagacagtgaggaagaatcagccagacaactgatggga
gaatatgcagcaaaagaagcaaccaagcagcggcagattgatgagcttagagatacaaag
acaggactggaacgaacaattgaacttaagtcgggcattcagcgaaagagacaggatgag
ctgaagaatgttaagttggaactccagcaactggaagggtcttccactagattgcaagaa
ttggaccaggaactcaacaaagcggagcatgatctcgaccgtgcagaaagaggcagcaaa
gtggagagcctgaaggctgaactggtgaatctgctaaatgaaaagggagcactggacaag
tccttaaggaaactcgatcaggaaatggagatgttaaacttgcacactacggccagaact
cagatggaaatgctgaaaaaagacaaggctgacaaagaagaacagatcaggaagattaag
tcaaggcgcaatgaggaattggtcttgctgttggggcatttcccaaacaagagacaactg
gaagattggcttcatacaaaagccacagagatcaatcagaccagagataaactgtttaag
atgaataaggatttggcatcagcagaccagaacaaaaatcacacaagtaccgcactgaaa
acaaaagaacagcaactctctacctacgaggaaaaacttttcgacttgtgcggaggccag
gattttgagagtgatctgtataaacttcaggatgacatcgaaaaggcatcaaagcaaaga
gctatgctttcgggagcaaccgctgtctacagtcaatttattagccagttaacagaggaa
actgaaccttgctgtcctgtctgtcagcgtgttttcccctccgaggctgagttacaggac
atcatcaatgatctccagtcaaaactgcggcttgtcccggataaacttaaatcagctgag
tctgagctgaagaagaaagagaaacgtcgtgatgagatgatgggactgaaaccaatcagg
gaaactgttattgaacttaaggaaaaggatttgccagaactacgcaataagctccaaatc
atcaatcgagatattcagcacctgaagaaggatgtggaggaacaggagactcttcttgct
gccttcctgtctgaggaaggcactgcaaaagcatgtctgcaagatatatcgctcatggag
agataccagatggaattgaaagacgttgagcgaaagattgcccagcaggctgccaagctt
cagggaatagatgtgaaccgaaccatgcagcaggtcaaccaggagaagcaagagatgcaa
cttcaagtggagacagtgtgtaataaaatagaactgaagcggaaaatgattcaagatcac
caagagcagatccagcttctgaagagtattgtcaatgaggtccgggcagaaaaactccaa
atcgccagcaacatgcagcgacgtcagcagctggaagagcagagtgctgaattttccaca
gaggttcagtccctacaccgagaaataaaagaatctaaggaacagctacctccactagct
gcagctctggataaactacagcaagaaaagcaagatctgatagagaggaaaaatatgagc
tacaaggagatacaagataagataaatgaaataaaagaaaaaatcaaaaatattgatgtg
tatgcaagagaaattgagaagtacatcaaggacagaagagatgaacacaaagagcaaaaa
gagtccgagcttcaagatactattactcagctcagtgaagctgaaaagcaacgagacaag
atccataaagatatggaggctacgcggaaggacattgatacacagaaacttgaggagcgc
tggttgcaggataacttgacgttacggaagagaatggaagaactgaatgtcgtggagagc
aagaggaaggagcttttaaaagagatgggagagatgaaagtaatgcatctcagaaatgag
cggaaacagctggaagaacgactggacgacttcaagaaaaatcgcaacctggctcaaggg
cggcagaaaggttttgaggaggaaatacttcacttcagaaaggagctgagagaacctcag
tatagagatgctgaggaaaagttccgagaaatgatgatcgtaatgagaacgacggaactg
gctaacaaggacctggatatttattacaaggcactagaccaagccataatgcgattccac
agcatgaagatggaagaaatcaacaaaattatccgtgacctgtggcgaagcacttacaga
ggtcaagatattgaatatattgaaatccgttctgatgctgatgaaaatgtgtcagccagt
gacaaaaggaggaattataattaccgtgtagtaatggtgaagggagacacagcactggac
atgagaggaaggtacagcgctggacaaaaggtccttgcttcactcattatccgtctggct
ctggctgagaccttctgcctgaattgtggaatccttgcactggatgaaccaaccacaaac
ttagaccgagagaacattgaatccttggctcacgccctggtcgaaataataaagtgtcgc
tcaaatcaacgaaacttccagctcctggtgatcactcatgacgaggactttgtggagcta
ctcagtcgttctcaatatattgaaagcttctacagagtcaaaaagaacatcgaccagtgt
tcagaaatcgtgaagtgcagtgtcagctccctgaacactcatggtccatga
DBGET
integrated database retrieval system
