Hemiscyllium ocellatum (epaulette shark): 132823544
Help
Entry
132823544 CDS
T09720
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hoc03041
]
132823544 (ythdc2)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132823544 (ythdc2)
Spliceosome [BR:
hoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132823544 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
Ank_2
HA2_N
Ank
AAA_22
ATPase
AAA_19
nSTAND3
AAA_16
T2SSE
AAA_7
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
132823544
NCBI-ProteinID:
XP_060693474
LinkDB
All DBs
Position
2:67305377..67470365
Genome browser
AA seq
1437 aa
AA seq
DB search
MSRPTSVSPRPGSAQSSQAASKAKGFKDIRIEEEVKIAVNIALERFRYGDQKEMEFPSSL
TSTERAFIHRLAQSLGLISKSKGKGAHRFLTVKKKDGSEMAQAVMTCTLTHSMKHAIRNL
IQRFPVTNKERTDLLPKTERGNALTVEAENNREMNKTSGRLNNGIPQVPPKRGDSELDAF
RQSLPVFEKRDEIVKIIKENRVILIVGETGSGKTTQIPQFLLDDCYKYGIPCRIFCTQPR
RLAAIAVAERVAAERGEKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDGTLAA
VTHVIVDEVHERDRFSDFLLTKLRDLMQKHPSLRLILSSAALDVNLFIRYFTGCPVIYIQ
GRPFEVKELFLEDILRTTGYTNKEMLKYKKEKQREEKQQTNLNEWYKAKETSSASRSEYQ
RQRFIPSLTAENDLLDDGGDSVFSQLNEKDVNSLEPWLIKEMDACLSDIWLHKDVDAFAQ
LFHLILSENVSVDYRHSETSATPLMIAAGRGFLSQVEQLLSMGANVSVKASNGWIALDWA
KRFGQSDIVDLLESFNSSIDLGNLDECVLVQSNGGELSQEDKDVLSVYHHSFDDEKVDLD
LIMHLLYNIFQSSDDGAVLIFLPGYDEIVGLRDRILYDDKRFADNSHKLQVFMLHSNMQT
SDQKKVLKSLPNGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNSVTMLKMVW
ISKASAVQRKGRAGRCRPGICFHLFSRLRFQNLLEFQTPELLRMPLQELCLHTKLLAPIN
CPIADFLAKAPEPPPSLIVRNAVQMLKTIDAMDSWEDLTELGYHLADLPVEPHLGKMVLC
AVVLKCLDPILTIACTLAYRDPFVLPVQPSQKRASMLCRKRFAAGTFSDHMALLRAFQAW
QKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSEN
WAVVKAALVAGMYPNLIHVDRENLLLTGSKEKKVRFHPTSVLSQPQYKKIPPANGQAVAV
QALPTDWLIYDEMTRAHRIANIRCCSAVTPISVVLFGGPARLSSSALQEPSSPRGNTYID
GVTNDSSDSEMEDKSTSKMATLKLEEWLNFRIDPEAASLILQLRQKWHSLFLRRMRAPSK
PWTQVDEATIRAIIGVLSSEEQAAGLQQPSGIGQRPRPMSSEELPVSSSWRSNSRKSSAE
TEFSDDSSSVEFRERVQLKSQQQQQQQRYKERGFLHPKRSADDRSDQSSVKSTDSSNYPS
PCASPSPPPSGKGSKSPSPRPNVPVRFFILKSSNLRNLEISQQKGIWSTTPSNERKLNRA
FWESSIVYLVFSVQGSGHFQGFARMISEIGRERSQEWGSAGLGGVFRVEWIRKESLPFQY
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERIPIGGKLPQPDSRLAIFGES
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggcctacaagtgtgtcaccacggcctgggagtgcccagtcaagccaagctgcc
tctaaagctaagggatttaaggatattcggattgaagaagaagtgaaaattgcagttaac
atcgcccttgagaggttccgatacggtgatcaaaaagaaatggaatttccatcttctttg
actagtacagaaagggcatttattcatcgtcttgcccagtcccttggcctgatttctaaa
agcaaaggaaaaggagcacacagatttcttacggtaaagaaaaaagatggctctgagatg
gctcaggctgtcatgacctgtactctaactcacagtatgaagcatgccattcgcaattta
attcagaggtttcctgttactaataaagagcgcacagatcttttgcccaaaactgaacgt
gggaatgcattaactgttgaagcagaaaacaacagagagatgaataagaccagtggtaga
ctcaataatggtattcctcaagtaccaccaaaacgtggagattctgaattggatgccttt
cggcagtcgcttccagtttttgaaaagcgggatgaaatagtgaaaatcataaaagagaac
agagtgattttaatagttggagaaacaggatctggaaaaaccacgcagattccccagttc
cttcttgatgactgttacaagtatggaataccttgtcgtatattctgtacccagcctagg
cgacttgcagctattgctgtagcagaaagggttgctgcagagcggggtgagaagattggg
cagactattggttatcagattcgactggagagcagggtttccccaaagacactgttaacc
ttttgtacaaatggagtactacttcgaacactaatggcaggagatggcaccttagcagct
gttacacatgtgatagttgatgaagtgcatgagcgagataggtttagtgatttcttacta
actaaactgagggatctgatgcaaaaacatccgtcgctaaggcttatactttctagtgca
gctttggatgttaatctcttcatcagatactttaccggctgtcctgtaatttacattcag
gggagaccatttgaagtaaaagaactctttttagaggacatcttacgcacaactggatat
acaaacaaagaaatgttaaagtataaaaaagagaaacaacgagaggaaaaacagcaaaca
aacttaaatgagtggtataaagctaaggagaccagcagtgccagcagatccgaatatcaa
agacaaagatttattccgagcctgacagcagaaaatgatttgctcgatgatggcggagac
agtgttttcagtcagttgaatgaaaaagatgttaattctcttgagccttggcttataaag
gaaatggatgcctgcctctcagatatttggctgcacaaagatgttgatgcttttgctcag
ctgtttcatcttattttaagtgaaaatgtcagtgttgactataggcacagtgaaacaagc
gctacacccttaatgatagcagcaggtcggggcttcctcagtcaagtggagcagctactc
agcatgggagcaaatgtcagtgttaaggcttccaatggctggatagctttggactgggct
aaacgatttggtcaaagtgacattgtagatcttctagaatctttcaattcttcaatagat
ttaggaaatttggatgagtgtgtcctggtccagtcaaacggtggtgagttaagtcaagaa
gataaagatgttttaagtgtctaccaccacagctttgatgatgaaaaggttgacctggat
ctaattatgcaccttctttataacatttttcagagctctgatgatggtgcagttttaata
tttttaccaggatatgatgaaattgtaggactcagagatcgcatactgtatgatgacaaa
agatttgctgataattcccacaagttgcaggtttttatgcttcattcaaacatgcagaca
tctgatcaaaagaaagtgttaaaaagtctacctaatggaattcgtaagattattctttcc
acaaatattgcagagacgagtattactgtcaatgatgtggtatttgtcattgattctggg
aaagtgaaagagaaatcatttgatgcactgaactctgtcacaatgttaaaaatggtatgg
atctctaaagcgagtgctgttcagaggaagggcagggcagggcgctgccgaccaggaatt
tgttttcacctatttagcagattacgattccaaaacctgttagagtttcagacaccagaa
ttgctgcggatgccattgcaggaactttgcctacataccaaactgctggctccaatcaat
tgtccaattgcagacttccttgcaaaagcaccagaacctccaccttcacttattgttaga
aatgcagttcagatgctcaagactatagatgccatggatagttgggaagatctaacagaa
cttggttatcacttagcggatcttcctgtggagcctcatctgggaaagatggttctttgt
gctgtagttttaaagtgccttgatcctattctcactattgcctgcactctggcctatcga
gatccatttgttctaccagtacaaccttcgcaaaagcgtgcttcaatgttgtgcagaaaa
cgctttgctgcagggacatttagtgatcacatggctcttttaagagctttccaggcttgg
caaaaagctcggagtgatggctgggagagagcattctgtgaaaaaaactttctttctcaa
gctactatggaaatcattattggcatgagaacccaattattgggacaactcagggcatca
ggttttgtgagagcacgtgggggtggtgacattcgagatgtaaacacaaactctgagaat
tgggctgtggtgaaagctgctttagttgcaggcatgtacccaaatcttatccacgttgac
agagagaatttattgctgactgggtccaaagaaaagaaagtcagatttcaccctacttct
gttctcagccaaccacagtataagaagattcctccagcaaacggacaagctgtggctgtt
caagcattgcccactgactggcttatttatgatgaaatgacaagagcacaccgaatagct
aatatacgttgctgttctgctgtaacgccaatatctgtagttttgtttggtggtccagcg
agactatcaagcagtgcgttacaagagccctcttcccctcgaggtaacacatacatagat
ggtgtcactaatgacagtagcgatagtgaaatggaagacaaatctacttctaaaatggca
actttaaaactggaagagtggctaaattttagaatagaccctgaagcagcaagtcttatc
ttacagttacgacagaaatggcacagtctattcttgagacgtatgcgtgctccatcaaaa
ccttggactcaggtagatgaggcaactatcagggcaatcattggagttcttagcagtgag
gagcaagcagcagggttgcaacaaccttccggaattggacaaagaccgagaccgatgtct
tcagaagaacttcctgtctcctcatcttggaggtcaaacagcaggaaaagctcagctgaa
acagagttttcggatgattcttccagtgtggagttccgggaaagggttcagttaaagtcg
caacagcagcagcagcagcaaagatacaaagagcggggcttcctccatcctaagaggagt
gctgatgacaggtcagatcagtcatctgtaaaatcaacagacagcagtaactatcctagc
ccctgtgccagcccatctccaccaccttcaggcaaaggctctaaatctccatcgccgagg
ccaaatgtaccagtacgatttttcattttgaagagcagcaatcttcgtaatcttgagatt
tctcaacaaaaaggaatctggtccactacacccagcaatgaacgtaaactaaaccgtgca
ttttgggaaagcagcattgtgtatctcgtattttctgtgcaaggatcagggcacttccag
ggctttgccagaatgatttcagagattggacgggagagaagccaggagtgggggtctgct
gggctaggaggagtgttccgagttgaatggataagaaaggaaagccttcctttccaatat
gcccaccatctgttgaacccatggaatgataataagaaagtccagataagcagagatgga
caggaattggagccacaggttggggaacaattgctgcagctctgggaacgaattccaata
ggagggaagctaccacaaccagatagcagacttgccatttttggggagtcttag
DBGET
integrated database retrieval system
