Hemiscyllium ocellatum (epaulette shark): 132823877
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Entry
132823877 CDS
T09720
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hoc04131
]
132823877 (vps13a)
Membrane trafficking [BR:
hoc04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
132823877 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
DUF764
FAM91_N
TAF1C_beta-prop
Motif
Other DBs
NCBI-GeneID:
132823877
NCBI-ProteinID:
XP_060693948
LinkDB
All DBs
Position
2:82633171..83044097
Genome browser
AA seq
3192 aa
AA seq
DB search
MVFESLVVEVLNRFLGDYVVNLDTSQLQLGIWGGDVVLNNLEIKENALCELNVPFIVKAG
HIGKLELKIPWKNLYGQAVEATLDGIYVLIVPCASIQYDAEKEELQLQEIKQRELQRIEE
AKQKVADKENPKEGKQDTFIEKLITQVIKNLQVKITNVHIRYEDDITNPNSPLSFGISLQ
NLSLETTDERWNPCLHDQCEHTFNKLVRLDYLCAYWNVSTKMYSKSHQIQALKDLKNGVS
TSDFIPETYQFIFQPLSAQAKLEMNPRAEVDFASPKMNFQVNIQDIAIEIKRPQYLSIME
LLGSIDMMTRNLPFRKYRPDVPCHNNAKKWWAYAINGILEEKIKPALNAWSWRHIRKHRQ
TLRNYRSLYKSRIKTKKPDEELLSALEELEKDLDLFNITLARQQAEVEVMKTGHKIYRPG
AKIEDEKTGGWFDWVWNWAGTKEEKPPESKSGIDLLMTPEEKAKLYAAIGYSEAVVDPTM
PKRYEAVKLSVKLVSMSVSIREEEDQPEIMKFAVIDLSMMMIQRPGAQAIKFEAMVSTLE
VTGLPQNTDKPLLLSSRSALTENEDILLRVMFETNPLDERADQRLKVDSCPLEIVYDART
VNGLVDFFRPPTDVQLVEITSATMMKLEEFRDKTATGLMYIIETQKILDLKVNLMASYVI
IPQNGFFDKSASLLVLDLGNLKMMSKNRARLPQITAGESTLEDIMARAYDCFDIQLSSVQ
LLYAKPHEDWKTARKRKVSSQHILRPMDLKLELCRAMVASDPRMPKFKVYGGLALLSVCI
SDQKLKRVLELIDSIPKPQSNTPSPSIKSHQLQKVSPNMTPRSVQKRAVQKDLYSSVLSM
ADSDDEFYDAPSSPVDEAPFLPVRAVSLQRSESIRKKQLRKQESMKNMTDFQMQFEISTI
SLGIYRYVEDTESPVLELEIVGLGTELKIRTYDMTSHTFLKEISLKCPEQTDAENKPIYI
ITTLDNDEDDLLTIEYIKANKDGPEFKTTYRNTEQLMKVNFSSLDVYLHSEALLSSIHFL
MNLIPQSETKVSSDEQAPEIEEKKEELLTKKKTSPRSGKLEDLIKLHLCAELALLKIFVC
DPTRRIAEISIVGLDAEVALRKNLSEVTAKLKDIVVLDSSEDAVYKKAVSIAGKEVFNFK
IISHVDATEGLAYSNMDVVDSCVQLTVGCIQVIFVKKFVSSVLAFLNIFQAAREAVTEAT
VQAASGVKDLAERSTRMQLDIHINAPVVVVPQSPVSKNVVVADFGFVIIQNSFSLVKQKG
STNLPPVIDSMKISLRELKLYRTIFENDAFRSEISLLQPVNLEVVVERNLAAAWYHEVPD
IKILGTLKPLHATLSQDDLIIILKSLNENLGDNSVEVVPAQAQRNSSSPSPSSAGRTVVT
AAVVETHKPLRVKTTLKLDFKLDELSLILYSQSLNPLNIVKEQRSEEDQLAEFKLHTLSS
SIKMLSDGSMNAAVKLFNCMLDDKRKAIQKATSRMIEMKLGVEKNAMMDLYYKQGREGMV
LDATIRDIHVCASMEFLLTVADFFIKANNQVSTAPVNKPAAMTSKEKVPPQAASKMELSV
HIQNPEIVFVADLTRVDAPSLVVTAQCEADINNDPELQQITATIKDLKVMACPFLKEKRK
DHVTTVLEPCSVFFQSAQATSGPRFLELAVKSLMLKVSPVIINTVITITSALNPTVDNPH
EKDSEIPPDLWNKKNVKDLKLWFLEETKNNESKNGPTAQLESTEENLKMTVDFICLTLEA
GVGHRTVPMLLAKSTFKGDVKNWSTFINLHCHLNLEVHYYNEMLAVWEPLLEPLEIENSD
EFRPWELGIKIKKKAVKSMTQSEKEEENSPAYKTVIQISSKDQLNITMSKCGLTMLNNLA
MAFTEAAGQSSDVFQKDQAPFKVKNCLGLDASVYPSDSFIIIGKHQKIPYELKDGEFLNM
DYQRTNNEKERLSNLTNTSSKLFYISLTPEGHTRADKIPLTKLGRRMYAVMHEESIVERS
IVCQIDAVRGSKRITIRSPVQIKNHFSVPFNVFEDLESYQKILGTIHPNEEFNVPLLSYR
SDLRLQLIVEDEKIYAPCEAITFGHVSTSTEILFHRKCQFSRGGDQHTLMINIVAMHDTL
ASDNPDEINNAYVLHLWPSAVLQNLLPYAVSVSLMEENKSRRLTLDEGHSAQLHDAVLDQ
SKLTLTIIDYLEHNWAGEYLIKSNQTDIELIKFKSYIDGEETEIDIAILATYNVGYVMLS
LYSPYWMINKTGRLLQYKADDVHRKHPLDYKKPLLFSFGSKCFFEKNKVQLRITDSQLSD
SFSLDTVGSYGSVKCKGPKKEYQVGVKIDNSSFNLTRIVTFTPFHMLINRTKHKIEVTEE
CESKWLGIDSNQCSPFWPARDSERLAVRIEGCSAGPQKFYFNKQENCLLLRLDNKFGGII
AEVHLAEHSIVVTFKDYHEGAAPFLIINHTNASRIEYHQSSSTGKGHQLEPGKATYYTWE
DPTGSRVLSWTCGCEDKARELSTIEDIFSAISQENGKIYLASFFEGLQRIIVFTDDEGTF
RLTQENENAEQAEQEIILSLQNLGISLINNSTKQEVVYIGITSSDVVWESKPKAKLRWKP
MSRKQTAQLEQVYKEYIESSPQESLIAELPCNFQALLTPNGMDMKLLQPSEVPIRRNYLP
AIKIEYTVSTHQKSLRVQIYKIQIQNQLSGAIFPFPFYPIIPPKSVTMDSAPKPFADVSI
ITRFAGKSDISRFRYFKVLIQEMDLKLDLGFLYAVMDLFTQSTDTVLAEQKLDLFKKDLE
YIQTELLTESAIDTTPVSLYEYFHISPIKLHLSFSISSGGEESNKQQEAELIPVQSLNLL
LKSIGATLTDVQDVVFKLAFFEIRYQFYTTQQLQWEVLRHYSKQAIKQLYVLVLGLDVLG
NPFGLIRDLSEGVEAFFYEPYQGAIQGPEEFMEGMALGVKALVGGAVGGIAGAASRITGA
MAKGVAAITMDEEYQQRRREAMNRQPSGIKEGITRGGKGLVSGFVSGITGIVTKPIKGAQ
KEGAAGFFKGIGKGLVGAVARPTGGIIDLASSTFQGIKRATETTEDVESLRPPRFIHEDG
VIRPYRLREGIGMQMLQKIENGRFAKCKYFGHKMINDSDLFMITKSGILFVTQGTFGQLN
CEWQYSFEEFTKEPFIVAGRRLRIEAKERVKSVFHAKEYGKIVNFKTEDDAQWILAKLQE
VRERGVRDHPKT
NT seq
9579 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtctttagtggtcgaggttttgaaccgtttcttgggggattatgtggtg
aacttggacacttcgcagttacagttaggaatttggggaggagatgtagttctcaataac
ctggaaataaaagaaaatgcattgtgtgagcttaatgttccattcatagttaaagctggt
catatcggtaaacttgaactgaaaataccatggaagaatctatatggacaagcagtggaa
gctacattggatggaatctatgtgcttattgttccatgtgccagtatccaatatgatgct
gaaaaagaggaattgcagcttcaagaaataaaacagagagaattacaaagaattgaagaa
gctaagcaaaaggttgctgacaaagaaaatcccaaagaagggaagcaagataccttcatt
gaaaagttaattacgcaagttattaagaatttgcaggttaaaattaccaatgtccatatc
cgctatgaagatgacatcactaatccaaactctccattgtcatttggaatttcacttcag
aacttgagtcttgagacaacagatgaaagatggaatccatgcttgcatgatcagtgtgaa
cataccttcaacaagcttgttcgattagactacctctgtgcatattggaatgtcagcacc
aaaatgtattcaaaaagccatcagattcaggcgttgaaagacttaaaaaatggagtttca
acaagcgactttattccagagacttaccagttcatttttcagccattatctgcccaagct
aaacttgaaatgaatccacgggcagaagttgactttgcttcgccaaaaatgaacttccaa
gtaaatattcaagatatagcgatcgaaataaaaagacctcagtatcttagcattatggaa
ctacttggatcaattgatatgatgacacgaaatctgccatttagaaaatatcggccagat
gttccctgtcacaacaatgctaagaaatggtgggcatatgctataaatggcatattggaa
gagaagataaagcctgcacttaatgcttggtcatggaggcacattcgaaagcacagacaa
acattaaggaattacaggagcctttataaatcaagaatcaaaactaagaaaccagatgag
gaacttctcagtgcacttgaggaacttgaaaaagatcttgatttgttcaacattactctt
gcaagacagcaagcagaagtagaggttatgaaaacagggcataaaatttacagaccgggt
gcaaaaattgaagatgagaaaactggtggatggtttgattgggtttggaattgggcagga
acaaaagaagagaaaccaccagaatcgaaatctggaattgatttattgatgacgcctgaa
gaaaaagctaaactctatgcagcaattggatatagtgaagctgtggtggatccaacaatg
cctaaaagatatgaagcagtaaaactttccgtgaagcttgttagcatgtccgtttccatt
cgagaagaagaagaccagccagagatcatgaaatttgctgtgattgatttgagcatgatg
atgatccagagaccaggagcacaagcaataaaatttgaagcaatggtaagcacactggaa
gtgacaggactacctcagaacacagacaagccactgctgctttcttcaaggagtgctttg
acagaaaatgaagatattctgctcagggtcatgtttgagaccaatccattggatgaaaga
gctgatcagcggctgaaggtggactcatgtccactcgaaattgtgtatgatgcgagaact
gtgaatgggttggttgacttctttcgacctccaacagatgttcagctggtagaaataacg
tcagctactatgatgaagcttgaagaattccgtgacaaaactgcaactggcttaatgtat
attattgagacacagaaaatcctggacttaaaagtgaatctcatggcttcttacgtcatt
attccacagaatggtttttttgataaatctgccagcttattggttcttgatcttggtaac
ttaaagatgatgagtaaaaatcgtgcgcgtttgccacaaattactgctggagaaagcacc
ttggaggatatcatggccagagcctatgattgttttgatatccagctgagtagtgttcaa
cttctttatgctaaaccacatgaggactggaaaacagctcgcaaacgaaaggtgtcatct
cagcatatattacgacccatggatttaaagctagagttatgcagagcaatggttgcctct
gatccaagaatgccgaagtttaaagtttatggtggacttgctttactttcagtttgtatc
tcagaccaaaaacttaagcgagttttagagttgattgatagtattccgaaaccacaaagt
aatacaccatcaccatccataaaatcccatcagctacagaaagtatcgcctaatatgacg
ccacggtctgttcaaaaaagagctgtacaaaaggacctatattcttctgttctgagtatg
gcagattcagatgatgaattctatgatgctccgagctcacctgtggatgaagcaccattt
ctgccagtcagagctgtttcattgcaaagatcagaaagcatacgcaagaaacaattgaga
aagcaagaatctatgaaaaatatgactgacttccaaatgcaatttgaaatatcaacgata
tcactgggaatctatcgttatgtagaggataccgaaagccctgtattagaactggaaata
gtcggacttggcacagagcttaaaatcagaacatacgatatgacttcacacacatttctg
aaagaaatcagtttaaaatgccctgagcagacagatgctgaaaacaaacccatttatatt
attactactctggacaatgatgaagacgatctccttactattgaatatattaaggctaac
aaagatggaccagaattcaaaaccacctatagaaacactgagcaactcatgaaggtgaac
ttttcatctttggacgtttatttacacagtgaagctctgctaagctccattcatttcctg
atgaaccttatcccacaatcagaaaccaaggtcagttcagacgaacaggctcctgaaatt
gaggagaagaaagaagagctcctcacaaagaagaagacatctccgagaagtggaaaatta
gaagatctgatcaaacttcatttgtgtgcagaactggcacttctgaagattttcgtctgt
gatccaaccagaagaattgctgaaataagcattgtgggtcttgatgctgaggtggctttg
aggaagaatttatcagaagttacagcaaagctgaaggatattgtagttttggattccagt
gaagatgcagtatacaaaaaggctgtttccattgctggaaaagaggtcttcaacttcaaa
ataatctctcatgtagatgcgacagaaggtttagcctattctaatatggatgtagttgat
agttgtgttcaattgacagttggctgtatccaagtcatctttgtaaagaagtttgtgtca
tcagtattggcattcttaaacattttccaagctgccagagaagctgtcacagaggcaact
gtccaagcagcatctggcgtgaaggatcttgcagaacggagcactagaatgcaacttgac
attcacatcaatgcacccgttgttgttgtacctcaatctcctgtgtcaaaaaatgttgtt
gttgcagactttggttttgtcattattcagaacagtttctcattggtaaaacaaaaaggt
tccactaatctcccacctgtaattgactccatgaaaatttcgttacgtgagcttaaactg
tacaggacaatatttgagaatgatgcttttcggtctgaaatctctttgcttcaacctgtt
aatctggaagttgttgttgaacgcaatttggctgctgcttggtaccatgaggttcctgat
attaaaattcttggaaccctaaaacctctgcatgctacactcagccaagatgatctgatc
atcatattgaagtctctgaatgaaaatttgggtgataattctgttgaagttgtacctgca
caagctcagaggaatagttcaagtccttctccaagttctgcaggaagaactgtggtaaca
gcagctgttgtagaaacacacaaacctctcagagttaaaacaacactgaagttggatttt
aaattagatgaactttcattgatactgtacagtcagtccttgaacccgttgaacattgtt
aaagaacagagatctgaagaggaccaactagcagagttcaaattgcatacactttccagt
tcaatcaagatgttgtctgatggatccatgaatgctgctgtgaaactttttaactgtatg
ctggatgataaacgaaaggcgatacagaaagccacatcaagaatgatagaaatgaagcta
ggagttgaaaagaatgcaatgatggacctctactacaaacaaggaagagaaggaatggtt
ctagatgcaactatacgtgatattcatgtttgtgcaagtatggaatttctactcacagtg
gctgacttttttatcaaggcaaataatcaggtctctacagctccagtgaataagccagct
gccatgacatcaaaagaaaaagtaccaccgcaagctgcgtccaaaatggagctgagtgtt
cacattcagaatccagagattgtctttgtggcagatttgaccagagtggatgccccatca
cttgtggtgactgcacagtgtgaagctgacattaataatgatccagaacttcaacagata
actgcaactattaaagatctcaaagttatggcctgtccattcctaaaagaaaagagaaaa
gatcatgttaccacggtcttagagccttgtagtgtatttttccaaagtgcacaagctaca
tctggtcccaggttcttggagttagcagtgaaatcactaatgctgaaagtatctcctgtt
attattaacaccgtgattacaatcacatctgccttaaatcccactgtcgacaatccacat
gaaaaggacagtgaaataccacctgacttgtggaataagaagaatgtgaaagacttaaaa
ctctggtttttggaggaaactaaaaataatgaaagtaagaatggcccaacagcacaatta
gaatcgacagaagagaacctaaaaatgacggtggacttcatttgcttgacactcgaagca
ggtgttggacatagaactgttccaatgcttctggcaaagtcaacttttaaaggggatgtg
aaaaactggagcacattcattaatctgcattgccaccttaacttagaggtgcattactat
aatgaaatgcttgctgtgtgggaaccgctactagaaccattagaaattgaaaacagtgat
gaatttaggccttgggaacttgggattaagataaagaagaaagctgtcaaatcaatgaca
cagagtgaaaaagaagaggaaaattctcctgcttacaaaacagttattcagatctcttca
aaagaccaacttaacattacaatgtcaaaatgtggtttgaccatgcttaacaatttggca
atggcatttactgaagctgctggccaatccagtgatgtttttcagaaagaccaggcacct
tttaaagtaaaaaattgccttggacttgatgcgtcagtttatcccagtgattcatttatc
atcattggcaaacatcaaaaaataccttatgaacttaaagatggagaatttctcaacatg
gactaccaacgaacaaataacgaaaaggagcggctgtcaaacttgactaatacaagcagc
aaattgttttatatttcattgactcctgaaggccacactcgtgcagacaaaattccatta
actaagttaggccgtcgaatgtatgctgttatgcatgaggaatcaattgttgaacgatcc
attgtatgtcagattgatgcagtacgaggaagcaagagaataaccatccgttctcctgtt
cagattaagaaccatttttcagtaccttttaatgtatttgaagatttggagtcttatcag
aagatacttggtacaatacatccaaatgaagagttcaatgttcctttgctctcttataga
tcagatcttcgtttgcagctgatagtggaagacgagaaaatatatgctccctgtgaagct
atcacatttggtcatgttagcacaagtactgaaatactatttcatcgcaagtgccagttt
tctagaggtggtgaccagcatacccttatgatcaatatagttgcaatgcatgacacgctg
gcatctgacaatcctgatgaaattaacaatgcttatgttctccatttgtggccgagtgct
gtacttcaaaaccttttgccttatgcagtcagtgtttccttaatggaggaaaataagagt
cggaggttgactctagatgaaggacattctgcccaacttcatgatgctgtactagaccaa
tccaaactgacactgactattattgactatttagaacataattgggcaggagaatacttg
atcaaaagcaatcagacagatattgaattaattaaatttaaatcatatatcgatggtgaa
gaaactgaaatagatattgcaatccttgcaacatacaatgttggatatgtgatgctgtca
ttgtatagtccctactggatgataaataaaacgggacgactgcttcagtacaaagctgat
gacgttcatcgtaaacatcctttggactacaaaaagcctctccttttctcttttggatct
aaatgcttttttgaaaagaataaagttcagcttaggataactgacagccaattatcagat
tcattttctctggacacagtgggtagttatggctctgttaaatgcaaaggaccaaaaaag
gagtatcaggttggtgtgaaaatagacaacagcagctttaatctaacaagaattgttacc
tttacaccatttcacatgctaatcaatcgaacgaagcacaagattgaagttactgaagaa
tgtgaatcaaagtggttgggcattgattcaaaccagtgcagcccattctggcctgccaga
gattctgagagattagcagttcgaattgaaggatgcagtgctgggccccaaaagttttac
ttcaacaaacaagaaaattgtcttttactgcgtctggacaataagtttggaggtatcata
gcagaagtacacttggcagaacattcgatagtggtgacttttaaggactatcatgaaggg
gctgctccattcctcattattaaccacacaaatgcaagcaggattgagtatcatcagagc
agttcaactggaaagggacatcaactcgagccaggtaaggcaacctactatacctgggaa
gatccaacaggatcaagagtgctgagctggacctgtggatgtgaagataaagcaagagag
ctgagtacaatcgaggatatattctcagcgatttctcaagaaaatgggaagatttattta
gcatccttctttgagggtctgcagagaatcattgtgttcacggatgatgaaggaacattc
agacttactcaagaaaatgagaacgcagagcaagcagaacaggagatcattctgtcattg
cagaacttggggatttcactgattaataattcaacaaagcaagaagtggtctacattggt
ataacaagttctgatgttgtttgggaaagtaaacccaaggcgaaattgcgctggaaacca
atgagtagaaagcaaacagctcagctagagcaggtttacaaagaatatatagagtcttct
cctcaagagagcctcattgctgaacttccatgtaattttcaggcacttttaactccaaat
ggcatggacatgaagctcttacaaccttctgaagtaccaataaggagaaattacctgcca
gctataaaaatagagtatactgtctcaactcatcagaaatctctccgagtccaaatttac
aagatccagatacaaaatcagctgtctggagccatctttccttttccgttttatccaatt
attccccccaaatcagtcaccatggattcagcaccaaagccttttgctgatgtcagtatt
atcacaaggtttgcagggaagtctgatatatctcgttttaggtattttaaagtcctaatt
caagaaatggatctgaagttagatcttggttttctttatgctgtgatggacctattcacc
caatcaacagatacagttcttgcagagcaaaagctggatctattcaaaaaggaccttgag
tatattcaaacagagctgttgactgaatctgccattgacaccacacctgtcagtttatat
gagtatttccatatttcacctatcaaactacatttgagcttctctattagttctggagga
gaagaaagtaacaaacaacaagaagcagaactgatcccagtgcaatctctgaacctgttg
ctgaaaagcattggagcaactctcactgacgtacaagatgttgtcttcaagcttgcattt
tttgaaatccgttatcagttttatactacacaacaacttcagtgggaggtactccgacat
tactccaagcaggcaatcaagcaattgtatgtgcttgttcttggactagatgtcttaggc
aatccttttggtttaatcagagatctatcagaaggagttgaagcctttttctatgaacct
tatcagggagcaattcagggacctgaggagttcatggaaggaatggccttgggtgtaaag
gcattggtaggaggtgctgtaggtggtattgcaggtgctgcttctagaataactggtgca
atggcaaaaggtgtagctgctataacaatggatgaagaataccagcaaaggcgtagggag
gccatgaacagacagccaagtggaattaaagaaggcattacacgtggaggaaaaggcttg
gtgtcgggatttgtgagtggaatcacaggaatagtgacaaaacctattaaaggtgcacag
aaagaaggtgcagctggtttcttcaaaggtattggcaagggcttggttggggctgttgca
agacccaccggaggcatcatagacctagccagcagcacttttcaagggattaaaagagct
acagaaacaacagaagatgttgagagccttcgcccacctcgatttattcatgaagatgga
gtaattagaccatacaggttgagagagggaattggcatgcaaatgttacagaaaattgaa
aatggaagatttgccaaatgcaagtactttgggcataagatgattaatgattcagacttg
tttatgattacaaaaagtggtatcttgtttgtaacacaaggaacatttgggcagctgaac
tgtgaatggcagtatagcttcgaggaattcacgaaagaaccttttattgttgctggaagg
aggttacgtattgaagccaaagaacgtgtgaaatctgtattccatgcaaaagaatatgga
aaaattgtgaatttcaaaactgaagatgatgcacagtggattctggcaaaattgcaagaa
gtgcgagaaagaggagtacgtgatcatccaaagacatga
DBGET
integrated database retrieval system
