Hemiscyllium ocellatum (epaulette shark): 132825002
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Entry
132825002 CDS
T09720
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hoc04121
]
132825002 (pdzrn4)
Enzymes [BR:
hoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132825002 (pdzrn4)
Ubiquitin system [BR:
hoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
132825002 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
Sina_ZnF
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
TRAF3_RING
zf-TRAF
GRASP55_65
PDZ_Tricorn
zf-rbx1
Prok-RING_4
U-box
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
132825002
NCBI-ProteinID:
XP_060695965
LinkDB
All DBs
Position
19:complement(59508798..59981268)
Genome browser
AA seq
1074 aa
AA seq
DB search
MGFELDRFNEEVDPDLKCNLCHKVLEDPLTTPCGHVFCASCVLPWVVQKGVCPVQCRRMS
TKELNHVLALRNLISKLDIKCDYRSRGCGKVVSLQKLAEHVEMCDYSPARCRHAGCQEVL
NLKDMDHHMRESCECRPVGICEQGCGLVLLHRELSPAAAAAGLTHCCVAALRSRVGSLQR
RAAGLARELKKQAVRAGHREQALLAQVSALQSEVQLTALRYQKKFNQYMVHISSISRNIA
ACCRENGETKSLTIVLHRENDTLGFNIIGGRPNPESEEDSPSEGIYVSKVMEKGPADRAD
GLEVHDRIIEVNGKDLSKATHEEAVEAFRNAKDPIVVQVLRRAPVTKNHGSSQEVPLVDA
GTQTEITFEHIMALSKLRSSSPPVPDICPYLLSDSCHSLHPMAHDYYEASDYLPNLAHDG
DRADELEYEEVELCRISSQEKLGLTVCYRTDDDEDDSGIYVSEVDPNSIAAKDGRIREGD
RIVQINGKDVQDREEAVALLSSEESRNILLLVARPEIQLDEGWLDDDRNEFLDELHMDML
EQQHNQAMQFTATTLEQKKHEEDGGTTDTATTSSNNHEKDSGLGRTDDSVRNDESSEQEI
LGEEQNSTSLQSQGDLGYSQDTLGSSEIQCNESFISGEYNDSDFVGTQDEECERFKELLE
LKCKMSNRSQFDLYYSTSTIQCGRRQQEVVDRELEMLNEELRNIELECQNIMQAHQLQTV
REEYGDVWSIHGSGFGNYNTSIDSPRGKKLADIMEHPEKSDKDSSSAYNTAESCRSTPLT
VDRSPDGSLQRIVSITNKKNLRSSIEAVQAAAVASPSSPSPRRISAEASPTVSSSSETPE
TAVPGDDTEHVTEGSKSGEGGEHVPYLSAYHSSPYRHVNIPAHARHYQSYMQLIQQKSAV
EYANSQLSLVSMCKDAHKATADSKAEWKVKIRSDGTRYITKRPVRDRLLKERAMKIKEER
CGMTTDDDAVSEMKTGRYWSKEERKQHVVRAKEQRRRREFMMRSRLECLRENPQSGGEGK
KEVNIIELSHRKMMRKRNKKIFDNWMTIQELMTHGAKSPDGTRIYNSFLSVTTV
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgagctggatcgtttcaacgaggaggttgaccccgatctaaagtgtaacttg
tgccacaaggtgttggaggaccccttgaccacaccgtgcggtcatgtcttctgcgcgagt
tgtgtgctgccctgggtggtgcagaaaggcgtgtgccctgtccagtgccggaggatgtcc
accaaggagctcaaccacgtcctggctctgcgaaacctcatctccaagctggacatcaag
tgcgactacaggtcccggggctgtgggaaggtggtgagcttgcagaagctggccgagcat
gtggagatgtgtgactacagcccggcgaggtgccggcacgcaggctgccaggaggtgctc
aacctgaaggacatggaccaccacatgcgggagagctgcgagtgccgcccggtgggcatc
tgcgagcagggctgcgggctggtgctgctgcaccgggaactgagtccagccgccgccgcc
gccggcctcactcactgctgcgtggcggctctccgctcccgggtgggctcactgcagcgg
agggcggccggcctggcccgggagctcaagaagcaggcggtccgcgccggccaccgggag
caggcgctgctcgcccaggtctcggcgctgcagagcgaggtgcagctcacggccctccgc
taccagaagaagttcaaccagtacatggtgcacatcagcagcatcagcaggaacatcgcc
gcctgctgcagggaaaatggcgaaacaaaatcgttaactatagttttacatcgagaaaat
gacacacttggatttaacattattggcggaagacccaatccggaaagtgaggaagattct
ccaagtgaaggaatttatgtttccaaagttatggagaaagggcctgctgacagagcagat
ggactggaagttcatgacaggatcattgaggtcaatgggaaggatctctcaaaagccaca
cacgaggaggctgtggaagctttccgaaatgccaaggacccaattgtcgtacaggttctg
cgtcgggcccccgtcacaaagaatcatggcagttcccaggaagttccacttgtggatgct
ggcacacagacagaaattacttttgagcacatcatggctctctccaagttgaggtcgtct
tcgcctccagtacctgacatctgcccgtatctattatcagacagctgtcactctctccat
cccatggcccatgattactatgaagccagcgattaccttcccaacttggcacatgatggg
gatcgagccgacgagctggagtatgaggaggttgagctgtgccgcataagcagccaggag
aagctaggccttactgtctgctaccgaactgatgacgatgaagacgacagtgggatctac
gtgagcgaggtcgacccaaacagcatcgcggcgaaagatgggcgtataagagagggcgat
cggatcgttcaaataaatgggaaggatgttcaagatcgggaggaggccgtggccttactg
tccagcgaggaaagcaggaacattctgttgctggttgccagaccagagattcagttggat
gaaggatggcttgatgatgaccggaatgaatttcttgacgagcttcatatggatatgttg
gaacagcaacacaatcaggcaatgcagttcacagctaccacacttgagcagaaaaaacat
gaagaagatggtgggacgacagatactgcaactacctcttcgaataaccacgagaaggac
agcgggctcggccgcacagacgacagtgtgaggaatgatgagagttcggaacaggagatc
cttggagaggagcagaacagcacctcgctgcaaagtcagggggacctgggctacagccag
gataccctgggcagcagtgagatccagtgcaacgagagcttcatctcgggggaatataat
gactctgactttgtgggcacccaggatgaagaatgcgagcggttcaaggagctcctggag
ctcaagtgcaagatgagcaatcgaagccagtttgatctctactactccaccagcacaatc
cagtgtggcaggaggcagcaagaggtggtggaccgggagctggagatgctcaacgaggag
ctaaggaacatcgagttggagtgccagaacatcatgcaggcccaccagctgcagacggtg
agggaggaatacggcgacgtgtggtcgatccacggcagtggattcgggaactacaacacc
agcatcgactcgcccagggggaagaaactggccgacatcatggagcacccagagaagtca
gacaaggacagctccagtgcctacaacacagctgagagctgccgcagcacccccctgact
gtggaccgctcgcctgacggctcactgcagcgaattgtcagcatcaccaacaaaaagaac
ctgaggagctccatcgaagctgtccaggctgctgctgtggcctcaccgtcatcgccgtca
cccaggcgcatcagtgcggaggccagccccaccgtcagcagctcctcagagacaccggaa
acagccgtgcctggtgacgacacggaacatgtgacagaggggagcaaatctggcgagggt
ggtgagcacgtgccctacctgtcagcctatcatagctcgccctaccgacatgtcaacatc
cctgcgcatgcgcggcactaccaaagctacatgcagctcatccagcaaaagtcagcggtc
gagtatgccaacagccagctgagtctggtgagcatgtgcaaggatgcccataaggccaca
gcggactccaaggccgagtggaaggtcaagatccgcagtgatggtactcgctacatcacc
aagcgcccagtgcgtgaccgcctgctcaaggagcgtgccatgaagatcaaggaggagcgc
tgtggcatgaccacagatgacgacgccgtgagtgagatgaagacaggccgctactggagc
aaggaggagcgcaagcaacatgtcgtgcgggccaaggaacaacggcggcgcagagagttc
atgatgcgcagccgtctggagtgcctcagggaaaacccccagagcggcggtgagggcaaa
aaggaggtcaacattatcgaactgagccacagaaaaatgatgaggaagcgcaacaagaaa
atctttgacaactggatgacaatccaagaactcatgacacatggtgccaagtccccagat
ggcacaagaatctacaattccttcctgtcagttactactgtgtga
DBGET
integrated database retrieval system
