Hemiscyllium ocellatum (epaulette shark): 132825213
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Entry
132825213 CDS
T09720
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03440
Homologous recombination
hoc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132825213 (palb2)
03460 Fanconi anemia pathway
132825213 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132825213 (palb2)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
132825213 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
132825213 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
132825213
NCBI-ProteinID:
XP_060696259
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All DBs
Position
20:36447478..36475125
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AA seq
1318 aa
AA seq
DB search
MEHSMKKTLSWETREQLKERLALLKKEYAKTVHKLQRAQKAERVRNHVKSTITHQNQLLE
EQTITQFETGEASSFLDTNQSSTSHQRSQVPVEESKERKSAVTFNLEPEIIEVINSPNVT
LTSTFEFAEQPSAEPFPSPVVETIPITNIDSQVHSRLKLKKKRSCEVLRKEAASEQNESL
AADGKSCDKEIEELNSPVNKESVRSSIFNRGKNVSKSVCGGVKENVEHRIFLGSPEGEEH
FELLKNGVQEVKGNCLTLPVSRTVNGSVYCSSGDKSTIVSTCENKAFSPRELKVLTEDAQ
QQQAKQNCSEDLTEALESNLAKESIMLDSDCLQASTAVAEVSEETSLNSCTLVEGLLFPV
EYYVRTTRRMTSCQRQVDLDAVIHSHLGKCRNGGKGRYKKSSHEQSNPVKGFPKAEGELN
NTLLLFNSQEDGIAGSDAASSQQDSIYPSNIDIDSQDIKSNPEKRRNSSREESIKSKLTD
TEVFKDEFVAWTLNNPRIPDVQCAMSSKVQSKKESKEKESSSCQPVTDANKLCGSAVNKL
DDRVFSNITDFTMKSASLSQNDSDHIVDSLQNAESQTSDILVGPFKEDSIDPSTVQEDTA
LTLSEHHLNLNSDTDSQELIPETQQDSFFSTARKKSFRGTKQSFPLGIDSKTEESLCQVS
QPKRRVRLTKGNSYRKTRAISRKFNTGLDEGTLTCSEPLLPVKKPIIQKLFHSLEVQDFD
LPDEEYGQLKEKLRAETLKKSSHPSQYNMVNGAVGTQVKTENWDMGKCDSPHSQDISQAV
ENLEEHLLQKSFDCKELNRTPEKPALNDVVCPYGQKTPKRTPNHKLSSSVLLSTPSCTSQ
SGRIHQCEQGAISPVFPSLGLTPAFSSPTLSQISCGNQNTSQIGTLPHTCKDVKNNSNCD
EELQTSGEGEVPLTNEKGTPSAREYLGKEEQPAECCHVNQSEMVNEDNAVEYIEEENNDA
LTPPLGNRLQQKPERQTLHLISKIQNPSTSCIIDLCTVFWMVKEAKTLCIACACETAVFL
WAPQQLSQWTNIHMWVFDKVPIIELIPIPDAVNILCVAFGNLEIREVKVLHSVERNCLEH
TLLQTGDINALLGLPGRRLVCSCGTLQSQHIELNILSKEGRREQCMQLVPPNEMVLAFSE
VKGEAEALIGSTIMSNIVIWNLKTGHLLKKIHLSESYPGTVCQKAYSESGILFVLFSHRY
VGNCDGSGGNRVCVLRMVGVNPMNGKSRPVMSYMLPLECHGRYLVGGVKDQSIAAIVTPG
TLILWDVLSGHITTILHHGPNAYWSLFHWAEANSCLLARKNDQTVYIYKYVGTGMDQV
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggaacatagcatgaaaaaaaccctgagctgggaaaccagggagcagctcaaagaaagg
ttggccttgctgaagaaagaatacgcaaaaactgtccataagttgcagcgtgcgcagaaa
gccgaacgggtgcgaaatcatgttaaaagcaccattactcatcagaatcaattgttggaa
gagcagaccataactcagttcgagactggtgaggcctcatcatttttggatacaaatcag
tcaagcacctcacatcaaagaagtcaagtcccagtagaagaaagtaaagagagaaaatca
gcagtgacctttaatcttgaaccggaaatcatagaagtcattaatagcccaaatgtgact
ttgacaagtacatttgaatttgctgaacagccttcagcagaacccttcccttccccagtt
gtggaaacgattcccatcacaaatatagacagtcaagttcacagtcgcctaaaactgaaa
aaaaagaggtcatgtgaagtactgagaaaggaagcagcaagtgagcagaatgaatctctg
gctgctgatggaaaatcctgtgataaagaaatagaggaactgaattcacctgttaacaaa
gagtctgtaagatcttccatctttaacagaggcaaaaatgtctctaaatcagtatgtgga
ggtgtaaaggagaatgtggaacatagaatattccttggttctcctgaaggtgaagaacat
tttgaattattaaaaaatggagtacaagaggtgaaaggcaattgtttaaccttacctgtg
agcagaactgtgaatggctctgtttactgcagttctggtgataagtctacaatagtgtct
acttgtgaaaataaagctttcagtcctagggaattaaaggtcctaactgaagatgcccaa
caacagcaagcaaagcaaaactgctctgaggatctcactgaagctttggagagcaatctt
gcaaaagagtcaataatgttagattcagattgtctgcaggcaagtactgctgtagctgaa
gtttcagaagagacctcactgaactcatgtacacttgtcgagggccttctcttccctgtt
gaatactatgtacgaacaactcgacgcatgaccagctgtcagcgacaagtggatctggat
gcagtgattcacagccacttgggaaagtgcagaaatggtggtaaaggaagatataagaaa
tcctcacatgaacagagcaatcctgtaaaaggcttccccaaggctgagggagagctcaac
aacacattattactttttaacagtcaggaggatggtattgctggatctgatgcagcttct
tcacagcaggactcaatatacccctcgaatattgacattgattctcaggatattaaatca
aatcctgaaaaaaggagaaacagtagtagagaagaatctataaaatccaagctcacagat
actgaagtgtttaaagatgagtttgtagcatggactttaaataaccccagaattcctgat
gttcaatgtgctatgtcttctaaagttcaaagcaagaaagagagcaaggagaaagaaagt
agttcttgtcagccagtgaccgatgctaacaaattgtgtggaagtgctgtaaataagttg
gatgatcgtgttttttcaaatattactgactttactatgaagagtgccagtctgtctcaa
aatgattctgaccatattgtggattcactacagaacgccgaaagccagaccagtgatatt
ttagtagggcctttcaaagaggattcaattgatccatcaacagtacaagaggacactgca
ttgactttgtcagagcatcatttaaacttaaatagtgatactgacagtcaggaattgatc
ccagagactcagcaagattcgttttttagcacagcaaggaagaagagtttcagaggtaca
aagcagtcttttccattgggaattgattcaaagacagaagaatctttgtgccaagtgtct
cagcccaaaaggagagtgaggctgacaaaaggtaactcttatcgcaaaacacgtgccatc
tctaggaagttcaacacaggacttgacgagggaaccctgacgtgttcagaaccattactc
cctgtcaaaaagcctatcatccaaaagctttttcacagtctggaggtccaggattttgat
ctccctgatgaggaatatggtcaacttaaagagaagttaagagcagagacattgaagaaa
tcatctcatccttcgcagtacaatatggttaatggtgctgtgggaacacaggtgaaaact
gagaattgggatatgggaaaatgtgacagcccacattcccaggacatcagtcaagctgta
gaaaaccttgaagaacacctgctacaaaagagttttgactgtaaggaactgaacaggacc
ccagaaaaaccagcattaaatgatgtcgtttgtccttatggtcagaaaactccaaaacgt
acacctaaccataaattatcttctagtgttctgctgtcaacaccttcctgtacttcacag
tcagggcggatccaccagtgtgaacaaggtgcaattagccctgtttttccttcgcttggt
ttaactcctgcatttagttctccaaccctttctcaaatcagctgtggaaaccagaacaca
tcccaaattggcacactaccacacacatgtaaagatgttaagaataatagcaactgtgat
gaagagttacaaacatctggtgaaggagaggtgccattaacaaatgaaaaaggcactcca
tctgcaagggaatatttaggaaaggaagaacaacctgcagagtgctgccatgtcaatcag
tcagagatggtgaatgaggataatgctgtggaatatattgaagaggagaataatgatgca
ttgactcctccgcttggcaaccggttacagcaaaagccagagaggcaaacattgcaccta
atttccaagatacagaatccatcaacctcctgtattattgacttatgtacagtattttgg
atggtgaaagaggctaaaacattatgcattgcctgtgcttgtgaaacagcagtgttcttg
tgggccccacagcagctaagccagtggactaatatccatatgtgggtctttgataaagtt
ccaataattgaactcatccccattccagatgctgtgaacatcctgtgtgtggcctttgga
aatctggagataagagaagtcaaagtattgcactctgtggagagaaactgcttggaacac
accctgctgcagacaggagatataaatgcgttgcttgggttgcctggaaggaggctggtc
tgctcttgtggcacacttcaaagtcagcacatagaattgaacatcctatccaaagaagga
aggcgtgaacaatgtatgcaattggttccacccaatgagatggtgctagctttcagtgaa
gtcaaaggagaggcagaagctttgattggatcgacaataatgagcaatattgtcatttgg
aacttaaagactggacatcttctgaagaaaatccatttaagtgaaagctacccgggcact
gtctgccagaaggcctattcagagtctggcatattgttcgtactcttcagtcatcggtat
gttggcaattgtgatggatctggtggaaatagagtctgtgttttaagaatggttggtgtc
aatcctatgaatggtaaaagtagacctgtcatgtcctatatgcttccactggaatgccac
ggaaggtaccttgtcggaggtgtgaaagatcagtccattgcagcaattgtaacccctgga
accctgattctttgggatgtactttctggccacatcacgaccattctacaccatggcccc
aatgcatactggtcacttttccactgggcagaagccaattcctgcctcctggccagaaag
aatgaccaaactgtatatatctataaatatgtgggaactggaatggatcaagtatga
DBGET
integrated database retrieval system
