Hemiscyllium ocellatum (epaulette shark): 132825340
Help
Entry
132825340 CDS
T09720
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hoc01001
]
132825340 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hoc04054
]
132825340 (ciita)
Enzymes [BR:
hoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
132825340 (ciita)
Protein kinases [BR:
hoc01001
]
Serine/threonine kinases: Other
TAF1 family
132825340 (ciita)
Pattern recognition receptors [BR:
hoc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
132825340 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
NB-ARC
LRR_14
AAA_16
AAA
AAA_22
nSTAND3
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
132825340
NCBI-ProteinID:
XP_060696474
LinkDB
All DBs
Position
20:complement(10115418..10205883)
Genome browser
AA seq
1234 aa
AA seq
DB search
MRSQSCTIQLPSLKDHSYLALLQEEHCSAQMAMSSTCGQNEEVTCGTGLDSNHCDLYKEI
LEDFCELDRTYEPSDVGIEGILKYLQDPRPLNAIELEQYFDDEILLETQEVTVKSTPLKG
PASAVCGMHFADTKVTCQSSVSPSEVNAYSRKRSANGDCPSASGIPSQDSTSFSDAPRAK
CLRGDEENLPPSPEHSNNSADILSPTIYRSDINHLKELKNHVAQIGSDTSLNSVKGDESI
MNSPVVSSAGFQFFPSYAVPQQVVKVPVNGVGHSRASTCFLVLNESLATLEITTPLLTSP
LHSPLSSTPESTPKNVPVDPWSTLALTVNTDSQTASPEVSPTGPGFSSPQSVNVQSSPES
VTNAQSVDSPTSPVSLDSERLDLETESSGEESSGPSSPTIKSYSKTRDVEACTEMVKEYL
RDMSQHSYICHEHDEMLLEDIYVDVTMIEVQAENKSAKNASKCLDKECKIYDIAERERAA
VNLSNLLNVSGKRPRETKIVSLLGRAGIGKSVLVQKICHDWVNGSFRQFEFVFWFKCRML
NFAKQYTLKDLLFQPFLPTLKNTDEVFQYLCHNSRKVLLILDDFEDLHHHDGLLQSSVCG
SAERPHTVKQLLAGLLQRKLLKGCTMLITARPKETFNQYLGRVDKIVEVLGFHPLHVQEF
LHRYFEDSSLAAEAMVCLQEQRYLLSFCSTPLLCRFICFVLKTKHWTGDGRLVLPSTLTR
LFLNIFHVLLQGKTQHITALHRQNILELSKHAFAGVQCHYSVCEASRAVEMSNFALKHGL
LRPFLMNSEGKGQECGKTFSHSCLQNFLAGLYLLFSEDVKCKGLMKLISLEHRKRKSQED
WLDVARRFLVGLAFQEGNEFLHGFSHHPKANVKGKKQKSLQKYLAELDVSALSTSKLVEF
CHCVYETQSAELTARVAAKLDQRLSFRGTRLTPADIFVLLYMMRNSPNNFAVDLRETNID
LPGIQQFVELRNVTSFRVSVCDVIKLWEHLEQNGFQELLRQSLLKFSVNPFEIKSLKDID
DLGLLVQIHKDRRFLSSTHDTTGSELYELPAVRTLQVLEFALGPVDGPQGFQKLTKILPA
LAFLKYLDLEGPSSQKVKMSENKIGDEGAERLAKVLSNLTSLEKLTLSRNQIADRGAQEL
ARSLPNLKFLKTLSLYDNIIGDKGAEKLAEILPIMKSLKVLDVKFNKITDTGAQRLTQSL
KDCPHIETIWLWSPTITHWMSEHIQQIDVRINLQ
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgagaagccaaagctgcaccatacagttgccatcactgaaagaccacagctacttggct
ctgcttcaggaggaacattgttcagcacagatggctatgtcaagcacctgcggtcagaat
gaagaagtaacttgtggaacaggtcttgacagtaatcattgcgacctttacaaagagatt
ttagaggacttttgtgaactggatagaacttatgaaccaagcgatgttggcattgaagga
attttgaagtatttgcaggatccacggccactaaatgcaatagaacttgaacaatatttt
gatgatgaaatattactggaaacgcaggaagtgacagtcaagagcactccactcaagggt
cctgcctcagcagtctgtggcatgcattttgcagacaccaaagtcacctgccagagttcc
gtttctccatctgaggtgaacgcatacagcagaaaaagatcggccaatggagattgtcca
agtgcttcgggaattccatctcaggattctactagtttctcggatgctccgagagccaaa
tgtttaagaggagatgaagagaatctacctccttctccagaacattccaacaattcagcg
gacatcttgtctccaaccatctaccgttcggacatcaaccatctgaaggaactgaaaaac
catgttgcccagattggatcagacacttccttaaactcagtcaaaggcgatgaatcgatc
atgaacagtccggttgtcagttctgctggtttccagtttttcccatcatatgcagtacca
cagcaagtcgtcaaggtgcctgtcaatggagttggacattcaagagcctccacctgcttt
ttagttctaaatgagagcttggcaactcttgagattacaacaccattactgacatcgcct
ctgcattcaccactgagctcaacaccagaatcaactcccaagaatgttccagtggaccca
tggagtactttagctcttactgtgaacacagactctcagactgccagtcctgaggtcagt
ccaactggtccaggcttctccagtcctcaatctgtcaatgttcagagctcaccagagtcc
gtgaccaatgcacagtctgtggatagtccaacctctccagtctctttggacagtgagaga
ctagatcttgaaacagagtcatctggtgaagaatcatcaggaccatcaagtccaacaatc
aagtcgtacagcaaaacaagagatgtagaagcttgtacagaaatggtgaaagaatatctg
agagacatgagccaacattcttatatttgccatgaacatgacgaaatgcttcttgaagac
atttacgtggatgtcacaatgattgaggttcaagcagaaaataagtccgcaaaaaacgcc
tcaaagtgtttggacaaggaatgtaaaatctatgatatagcagagcgagaaagagctgct
gtaaacttgagcaatctccttaatgtttcaggaaaacgaccaagagaaaccaaaatagtt
tccttactggggagagcagggatcggtaaaagtgtacttgtccaaaaaatctgccatgac
tgggtgaatgggtccttcaggcagtttgagtttgttttctggtttaagtgcaggatgctc
aattttgcaaagcaatacacgttaaaagatctacttttccagccgttccttccgacctta
aagaacacggacgaagtatttcagtatctctgccacaactcccgcaaagtcctgctcatt
ttggatgactttgaagacttgcatcaccacgatggcctgctgcagtcctcagtgtgtggt
tcagcagagagaccccacaccgtcaaacagctgcttgcaggcctgctccagaggaagttg
ctgaagggttgcacgatgctcattacagcaaggccaaaagaaaccttcaaccagtatctc
gggagagtggacaaaatagtggaagtgctagggtttcacccgcttcatgtgcaggagttc
ctgcacaggtactttgaagactcctctttagctgctgaagccatggtttgtcttcaggag
cagcggtacctgctcagcttctgctccacccctttactatgcagattcatctgttttgtt
ctcaaaaccaagcactggactggagatggccgtttggtattgccatccactctcactcgt
ttattcctgaacatttttcacgtcctgctgcagggtaaaactcaacacatcacagctttg
cacaggcagaacatcctggagttgagcaaacatgcctttgcgggggtccagtgccattac
agtgtgtgtgaggcctccagagcagtagaaatgtccaactttgctttgaagcatggcctt
ctaagacccttcctgatgaatagcgaaggaaaggggcaggagtgcggcaagactttctct
cattcttgcctgcagaacttcctggcgggactctacttgttgttttccgaagatgtcaag
tgcaaagggttgatgaagctaatctccttggagcacagaaagcggaaatctcaggaggac
tggctcgacgttgctcgcaggttcctggtaggactggcttttcaggaaggaaatgagttc
cttcatggcttctcccatcatccaaaggccaatgtcaaaggcaagaagcaaaaaagcctg
cagaaatatttggctgaactcgacgtctctgcactcagcaccagtaagttggtggagttc
tgtcattgtgtttatgaaacgcagagtgctgagctgactgcacgggtagctgctaaactc
gaccagaggttgtccttcagaggcacgaggctgactccagctgacatctttgtactgctc
tacatgatgcggaactcaccaaataactttgctgtcgacctgagggaaacaaacatcgac
ttgcctggaatccagcagttcgtcgagttgaggaatgtcacctcgttcagagtgtcggta
tgcgatgtgataaaactttgggaacatttggagcaaaatgggttccaagagctacttcgt
cagtcacttcttaaattttctgtgaatcctttcgagattaagagtttgaaagatatcgat
gaccttggtttactggtacaaattcataaagatagaagattcctttcaagcacacacgac
acaacaggaagtgaactctatgagctacctgctgtcaggacattacaggtgctggagttt
gctcttggcccagtggacggacctcaggggtttcaaaaattaactaagattctaccagct
ctggcatttttaaagtatctagatcttgaaggaccaagctcccagaaagttaaaatgagt
gaaaacaaaattggagatgaaggagctgagagactagcaaaggtgttgtctaatctaaca
tcgctagaaaaactgacattgtcgcggaaccaaatagctgaccgaggagcacaggagctg
gctagatcacttcccaacctgaagtttttaaagacactgagtctgtatgacaatatcatt
ggtgacaaaggggcagaaaaattagcagaaatactcccaataatgaagtcgttgaaagtt
ctagatgttaaatttaataaaatcacagatacgggagcccagaggctgactcagagttta
aaagattgtccccatattgagacaatatggctgtggagcccaacaattacacactggatg
tctgaacacattcaacagattgatgttcgaattaatttacagtag
DBGET
integrated database retrieval system
