Hemiscyllium ocellatum (epaulette shark): 132825401
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Entry
132825401 CDS
T09720
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
132825401 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hoc04121
]
132825401 (slx4)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132825401 (slx4)
Ubiquitin system [BR:
hoc04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
132825401 (slx4)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
132825401 (slx4)
BRITE hierarchy
Motif
Pfam:
Slx4
BTB
ZNHIT3_C
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
132825401
NCBI-ProteinID:
XP_060696606
LinkDB
All DBs
Position
20:complement(24234401..24265458)
Genome browser
AA seq
1871 aa
AA seq
DB search
MDESDDDFVELCKTTSRCPVEAEGKKCKSVCWSRTNSFVAKTKLREKQILNSEASCFNES
KTNSDGTAEWKNSRTTECLAHDLPAPSCSRQVTIKDVTVLQPSKPEALEGSGTVKDSLPD
SMWIHRLSHSAIMKKTVNKGLGVKERVLGNMQRFRRKEPERLRHSNDVKMMSIQEDEKNE
EFCSLDTNKKNGRTDSHSTVTSLPTSFISEEDAVADDCHRLADSDLALAWTIQQELGATE
AYTLEDNGLFFCVICQKDLSNMNSARRTQHINRCLDEGEQKAATAVLKNIPSVPECPICG
KHFKSFKSRAIHLKRCAIELEVPPQLLLQAVQRQNSQCPESSTYSTSLQPSGLKRKSSTR
ENEPPKKCKTTSKPPLDEDTMVAMALSASLMEQQKQEEERQNATVHADNFSLAKVMGASD
KRCRKKRKDDLPPLLLVQDPEMAFQRVQNSLAALLSEEIEISSTPPLPASNFCIGGILSH
VCHVRPGITEQESLWCRSALFGSSNWDSALFYAANLVPPITPRKQGHDQEYLAYKEQMSS
SVVPDRALVRPSLKLIDQHSAPADVGSKTETADVCLASSQQDRTFFDLMDLAGEGMTLTQ
WNYGVNHEQDNEITGRNIKDTLLDDIPPSGFVPARSERSCGNSLHHAQQLKKLSEDLAGL
VNNPHLSDVQFQVDSGEIVYAHQFMLYARSPHLVQLVHDEGFLVEEDGAAMTRRFLLPEV
TTEGVCAFLQYLYTASITVSPSVISELHTLANRFAVNGLVEICKAFSNEVESLEGSENDP
STKIDENYGTREDNLQDLLRSMWMDEPEDPALDRQSAEDEDKFSEKVDEEELEELYEFAA
TQRKIERTSLQTQEIERVEQKNSVENEEKLNGYGENELSVEGPRTKSEIVENCETSMTER
ETRSDSSCPSKNLEASTMQEPSQKGETFHLKESQNHSFRPDLNLNTSDDCLFSETNLSVE
SQQDEIKYGLDVFEEDKTLASKSSHSSSSFANCSINSLSPMGEIECPSTCPSLPDLPLVG
SSPLETYANTQSPQECLSLVSAVISSLGAAQHGNSSEITSCDSVISNGQLNLADKRCDNA
PSLQEHSAHKSSKYLEWLSNQKTPSTGAPYLQRLSQNTSEKPQGNQSPTISIDSSQSPSE
NNSNNTLLIISSDEEMDITEKMFPLCSESTQLMPLPNDKCSSIESNPGVKQFIIKSEKVL
TSKIDAERKNVKVSGITSKYLDEVHNSSISEFSIGDVVKKVANHENQVMDSENELTLQLS
SDGEQSNEDRAVEGSWLVPATPLSTGSRHYSALTTNSCSLQSQGVRRDKLFEKKIEQEVA
VLKSVNVVQGKPQAINISEDVFRDDQEIVSELDCSAEKNSVNQWSLPASPIPSTQRSDCI
VELGSEETSFTHSPSQLEGALPLSFSSEEKESSDKSVLEIEDTEEEMFEDGPPIPSDEFW
NSKGSPQLEVEDFHGEAVFHKIVNPVRNKDGHYHVTNADSKNSTPLSEKSKPRLTFPATE
IDQRSKADAKRLPNRPHPSSFDSNIWTEGEFPEVLSGLSQKLSVFQKESICNRQHVGEHK
TPAPVNRKKAQLSLAPITPEPPYSTMATPHLKKELSKFGVRPLPKKKMILKLKEIYQYTH
QVVQPDPDTQSKQQISSSHPCTWKTIPALTSKLKVGTNKLSQPVSSGRNQQKSHSKKQSQ
SISAETSKRAMKGHLKTTSKRKVKSLVLQSDGLEAKSPLKVVASDVANQLSSSQSSSSSW
SEDSFESQRLLANECDNVLSTDSDDDKDDGITPSQAIIREADTKEAIRQYILSDLSLYSE
IVQYKPFELSDLHQKLKENGIKVSKGKLLEFLDAQCITFTTARARKEMLKRRKQGIEKQR
KGKLSQCHKKR
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatcagatgatgattttgttgaactctgcaagacaacatctagatgcccagtt
gaagctgaagggaagaaatgcaaatcagtctgctggagccgcaccaattcgtttgtagca
aagacaaaattaagagagaaacaaatcttgaacagtgaagcaagttgttttaatgagagc
aaaaccaacagtgatggaacagcagagtggaaaaacagtaggacaactgaatgtctggca
catgatctacctgccccttcatgcagcagacaagtgacaataaaagatgtcactgtgctt
cagccttcaaagcctgaggctttagagggctctgggactgttaaggatagcctaccagac
agtatgtggatccataggctcagccattcagcaattatgaagaaaactgttaacaaaggc
ctaggtgtgaaagaacgagttttgggaaatatgcagagatttaggagaaaggaacctgaa
cgtttgcgacatagcaatgatgtgaaaatgatgtctatccaagaggatgagaagaatgaa
gaattctgttccttggacacaaacaaaaagaatggtcgaacagacagtcattcaactgta
acatcccttcctacttcatttatttctgaagaagatgctgtagctgatgactgccatagg
ttggctgacagtgatctggccttggcgtggacaatacaacaggagttgggagcaactgag
gcctatactcttgaagacaatgggctctttttttgtgtaatctgtcagaaggatctttcc
aacatgaactctgctcgacgcactcagcacatcaacagatgcttagatgaaggagagcag
aaagcagctacagcagtcttgaaaaacatcccttcagttcctgaatgtccaatctgtgga
aaacattttaaaagcttcaagagtcgagcgattcacctcaaacgctgtgccattgaattg
gaggttccaccacagttgttgttgcaggcagttcaaagacaaaactcccagtgtcctgaa
agctccacttactcaacaagccttcagccaagtggattaaaaagaaaaagttcaacaaga
gaaaatgaaccgccaaagaaatgcaagaccaccagtaagccaccattggatgaggataca
atggttgccatggcattatctgcatctttgatggaacagcaaaaacaggaggaggagagg
caaaatgcgaccgtgcatgctgataacttcagccttgccaaagttatgggagcatcagat
aagagatgtcgaaagaagaggaaggatgaccttcctccattgttattggtccaggaccct
gagatggcatttcaaagggtacaaaacagtttggcagcactgttgtctgaggaaatagaa
atatctagcacccctccattaccagcaagcaatttctgcataggcggaatactgagccac
gtttgccatgtgcgtccagggataactgagcaagaaagcctgtggtgtcgcagtgctttg
tttggatccagtaattgggactctgcactcttttatgcagctaacttggttccacctata
acaccaaggaaacagggacatgatcaagaatatctggcttataaggaacagatgtcatct
tcagtggtgcctgacagagcccttgtaagaccatccttaaagttgattgatcaacattct
gctccagctgatgttggaagtaagactgagactgcagatgtgtgcttagctagcagtcag
caggatcggacattctttgacttgatggacttagctggtgagggaatgacattgacacag
tggaattatggggttaaccatgaacaagacaatgaaataacaggaagaaacataaaggac
actttattggatgatattccacctagtggatttgtcccagctcggagtgagagaagttgt
ggaaatagtttgcaccatgcacagcaactgaagaaattgagtgaagaccttgcaggactg
gtgaataatccccacctgagtgatgtgcagtttcaggtggacagcggtgagattgtgtac
gctcaccagtttatgttgtatgctcgctctccacatcttgtccaacttgtgcatgatgaa
ggatttctggtggaagaggatggtgctgctatgactcgcagattcttgcttcctgaggtt
acaacagagggagtttgtgctttccttcaatatctatacactgctagtataactgtatct
cccagtgtgatttcagagcttcacactcttgctaacagattcgctgtgaatgggttggta
gagatctgcaaagccttttcaaatgaagttgaatctcttgaaggttcagaaaatgatcct
tccactaaaatagatgaaaactatggaacgagagaagacaatctccaggaccttctgagg
tccatgtggatggacgaacctgaggaccctgctttggaccgtcaatccgcagaggatgaa
gataagttcagtgagaaagttgatgaggaggagttagaagaactttatgagtttgctgcc
actcagagaaaaattgagagaacctcccttcagactcaagagattgagagagttgaacag
aagaatagtgtggaaaatgaagaaaaacttaatgggtatggagaaaatgaactgagtgtg
gagggtccaagaactaaaagtgaaatagttgaaaattgtgagacttccatgactgaaaga
gaaactagatctgactcatcctgtccttccaagaatctggaagcatccacgatgcaagaa
ccttctcaaaagggtgaaacattccacctaaaagaatctcagaaccatagcttcagacct
gatttgaatttaaataccagtgatgactgtctcttttcagaaacgaatttgtcagtagaa
tcacagcaagatgaaataaagtatggtttagatgtctttgaagaagataagacattggct
tcaaagagcagtcattcatctagctcctttgccaattgtagcattaacagtctttcaccg
atgggtgagattgaatgtccctctacttgcccgagtttgccggacctgcctttggttgga
tcatcaccgttggaaacttatgcaaatacgcaatctccacaggaatgtctgtctttggtt
tcagcagtaatctcatcccttggagctgcacagcatgggaattcctctgaaataacgtct
tgtgactcagtgatttcaaatggacaactgaatttggcagacaaaagatgtgataatgca
ccaagtctgcaggaacacagtgctcataaatcttcaaaatacttagaatggttatcaaac
caaaaaaccccttcaacaggtgccccttatttgcagaggctgtctcaaaataccagtgaa
aagccacagggcaatcagtcaccaactattagcattgactccagtcagtctccatcagag
aataattccaataataccctgttgattatatcctcagatgaggaaatggacataactgaa
aaaatgtttccactttgttctgaaagcacacaattaatgcctttacccaatgataaatgt
tctagtattgaatcaaacccaggtgttaaacaattcattattaaatctgaaaaggtgttg
acgtctaagattgatgctgaacggaaaaacgtcaaagtttctggaattacatccaaatat
ttggatgaggtacataacagtagcatttcagagttttccattggtgatgttgttaaaaag
gtggccaaccatgaaaaccaagttatggacagtgaaaatgagctgactctacagctaagc
agtgatggtgaacagagtaatgaagaccgtgcagtggaagggtcatggctggtaccagca
actccactttcaacaggatctagacactattctgcgttgactacaaattcttgctcccta
caaagtcagggtgttagaagggacaagctatttgagaaaaaaatagaacaggaggttgcg
gtattaaaatctgttaatgtggtacagggaaaaccacaagcaattaacatatcagaagac
gtttttagagatgaccaagaaatagttagtgagttggattgttctgcagaaaagaattct
gtcaatcagtggtcactgccagcatctccaattccttccacacaaaggtctgattgtatt
gttgaattaggaagtgaggaaacttcattcacccattctccttcacagctagaaggggca
ttgccactgtcattctcttctgaagagaaggaatcatcagacaagtctgtgctggagatt
gaagacaccgaagaggagatgtttgaagatgggccgccaataccatctgatgagttttgg
aattctaaaggtagtcctcaacttgaagtggaagattttcatggtgaggcagtatttcac
aagatagtcaatccagtgaggaataaagatggacactatcatgtcacaaatgcagacagt
aagaatagcacacctctgtcagaaaaatcaaagcccaggctgacctttccagctactgaa
atagatcagagaagcaaagctgatgcaaaacgcctaccaaacagaccacatcccagttcg
tttgattctaatatttggactgaaggtgaatttcctgaagtcctgtctggattatcccaa
aagttatctgtatttcagaaagaaagcatttgtaacaggcaacatgttggagagcacaaa
actccagcccctgtcaaccgaaagaaagctcaactttcattggctcccatcactccagaa
ccaccttattcaacaatggccaccccacacctaaagaaagaactgagcaagtttggtgtt
cgacctctgccaaagaagaaaatgattctgaaattaaaagagatttatcaatatacacat
caagtcgttcagcctgatcctgacacccaatcgaagcagcaaatatcatcttcacaccct
tgcacctggaaaacaatcccagctttaactagcaaactaaaagtgggcaccaacaaactg
tcccagccagtttcatcgggaagaaaccaacagaaatcacactccaaaaaacagtcacaa
tctatttcagcagaaaccagcaaacgagcaatgaaaggtcaccttaaaactacttctaaa
agaaaagtgaaaagcctggtgcttcagtcagatgggctagaagccaaatcacctttgaaa
gtcgttgcttctgatgtggctaaccagctgtcttcttctcaaagctcctcttcatcatgg
agtgaggattcctttgaatcacaaaggctattggctaatgaatgtgacaacgtcttaagc
acagattcggatgatgataaggatgatggaatcactccatcacaggcaataatccgtgaa
gcagataccaaggaggccatacgccaatatattctgtcagacttatctctgtatagtgaa
atcgtgcaatacaagccctttgaactgtcagacctccaccagaagcttaaggaaaatggg
ataaaggtttccaaagggaaactgcttgaatttcttgatgcccagtgtatcacttttacc
acagctagagcaaggaaggaaatgttgaaaaggagaaagcagggcattgaaaaacagcga
aaaggaaagctcagtcagtgccacaagaagaggtaa
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integrated database retrieval system
