Hemiscyllium ocellatum (epaulette shark): 132825509
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Entry
132825509 CDS
T09720
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132825509 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoc03021
]
132825509 (cpsf4)
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132825509 (cpsf4)
Transcription machinery [BR:
hoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132825509 (cpsf4)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132825509 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
132825509
NCBI-ProteinID:
XP_060696835
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All DBs
Position
20:complement(51261088..51277560)
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AA seq
272 aa
AA seq
DB search
MQELISNVEHIRFELEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLRASCGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTGVDQP
PLQQQQQILQKQSLTPFLQRSSSLVQIPSTNIIVGQQKSNTQSSGSVQQSQFQTLSNRGP
RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctcatttccaacgtggagcacatcaggttcgagctggagatcgcggtggag
cagcagctgggggcccagccgctcccgttcccgggaatggacaaatctggggcagcggtc
tgtgaattctttctgagagcatcatgtggaaagggtgggatgtgcccttttcgtcacatc
agcggcgagaagacagtggtgtgcaaacactggctgaggggcctctgcaagaaaggagat
cagtgtgaattcttacacgagtatgacatgaccaagatgcctgagtgctatttctattcc
aaatttggagaatgtagtaataaggaatgtccatttctacacattgaccctgagtccaaa
atcaaagactgcccctggtatgaccgaggattttgtaaacatggtcccctgtgtaggcac
cgacacacacggcgcgtcatctgtgttaactatctggtaggattctgtcctgaaggcccc
agctgtaaatttatgcatcctcgttttgagctgccaatgggtactggtgttgaccaacca
ccgttacagcaacagcaacagatacttcaaaagcagagtcttactccgtttcttcagcgg
tcatcctcactggtacagatacctagcaccaacataattgtagggcagcagaagtcaaac
acgcaatcaagtggatcagtgcaacaatctcaatttcagacattgtcgaatcgaggccct
agaccattagagcaagtcacgtgttataagtgtggtgagaaaggacattatgctaatcga
tgtaccaaaggacacttggcatttcttagcggtcagtag
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