Hemiscyllium ocellatum (epaulette shark): 132825603
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Entry
132825603 CDS
T09720
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132825603
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
132825603
3'-5' decay
Other 3'-5' decay factors
132825603
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
ResIII
UvrD-helicase
zf-CCCH
Mov-10_helical
AAA_22
PAM2
NPHP3_N
T2SSE
AAA_16
AAA_14
AAA_7
MOV-10_Ig-like
AAA_24
Bac_DnaA
Motif
Other DBs
NCBI-GeneID:
132825603
NCBI-ProteinID:
XP_060696968
LinkDB
All DBs
Position
20:36958783..37234627
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AA seq
1054 aa
AA seq
DB search
MILEGKLKDVYDALCDCKTTDCMNGTSLNHLRRLLHLLTELQAATNDALFSSEQDAKEND
CRWKFRPPPRGIIGIDEYSLCCQYLECGACHFEDFCVFAHSDSELLEWRERHAYRQLHYQ
QQREQLQHGGNYSERLIEKWINSPSPERVVSGSVEGVRVECAQELNQVSDSRKYDFSWTF
AFTCDPPRLLDHVAFLINAYTPCFHIASIAAGDSDSLHPYSISTKCQEWSQHLSGQNRME
ERVYEIVVKFSVEVFGNFQQTIFFDFGSEPVLMQTVTVSTLSDQGTEALLLHQQQSLTTS
QRWDSTCKQVVDFRPQEQSDLDLTLLVTYQIPAAADQLFTRSVLDKALNRHNYHSRFHDL
LYIEENAQNKEISKFNVKANLHITTSYVVPGNHGAARHVQNGQLFACVLLNDTVITKDTA
VGRLVMEKVTSVLLIPLSKKKGLGSNQGNKEKVYEVLVEDRSRECMLLRLSKECCEDLKL
RPERDIEVELQFQLNRLSLCEMHLALDNLKDCSLVSPDVSSLLTLDLPDRDWEKQLDPRL
NSKQRKAASIITAPILFSLPPILLTGPCGTGKTFTLAHAVKQLVKDPDKSLRILFCTHSD
TAADNFIKDYLVPMFENDASNLTLLRIYHKTKNVKTVHPTVQRYCLLARNQSAFLLPRKE
DILKCQVVVATVSSSKYLCCADLQHGYFTHILVDDSSRAIECESIMALGLADKTTRIVLA
GDPMQLNPVVYSEFARERNLHISLIKRLSQLYPPDSCYHISLEEQYRSHEVIISLASELF
YKGGLTANSKQPIHKDFYPLMFCVAWGADVQDKISTSYYNCSEVLEIAEQVEELQKRWPV
AWGKLDENSIGVVTPYANQVMRIRAEMQKKKLNDVTVEQVLNIQGKQFRVLFLSTVRTRH
TYKDPPASVRRRDAQLEESAEDLEYGFFSSYRMLNTILTRTQSLVVVVGDPVALCSIGKC
RKIWEHFIFVCHKNGSLHGTTLHEIKTQLDNLELSRGCVLNPLAPEFIPRTIPNFTAFSG
RLQASPAKTCSQVTWLGYQNRLALDPRKAFTWSL
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgattctagagggaaaactgaaggatgtttatgatgctttgtgcgattgtaagactacg
gactgtatgaatggaacctccttaaaccatctgagacggttacttcacttgctgacggag
ttgcaggcagcaactaatgatgctctcttttcatcagagcaagatgccaaagaaaatgat
tgtcgatggaagttccgtccacccccacgaggaattattggaattgatgagtattccttg
tgttgccaatatttggaatgtggagcatgccattttgaagatttctgtgtttttgctcat
tctgactctgagttgctagaatggagagagcgacacgcttacaggcaacttcattatcaa
caacaaagggagcaacttcaacacggtggcaattatagtgaaagattgattgaaaaatgg
attaacagtccaagtccagaaagagtggtgagtgggtctgttgaaggtgtgagagtggaa
tgtgctcaggaattgaatcaggtctctgacagcagaaagtatgacttttcgtggacattt
gcttttacttgtgatcctccacggttactcgatcatgttgcgtttctgattaatgcctac
acaccatgtttccacattgcatccattgctgctggtgactcagatagtctccatccatat
tctatatcaaccaaatgtcaagagtggagtcaacacttgagtggtcagaataggatggag
gaacgtgtttacgaaattgtagtcaaattttctgtagaagtctttggaaattttcagcaa
accatattttttgacttcggatctgagccagttttgatgcagacagttacagtgtctaca
ctgtcagatcaaggtacagaagcattgctactgcatcagcagcaatcccttacaacatca
caacgttgggattcaacgtgcaagcaagtggttgattttcgacctcaagagcagtctgat
cttgacctgacactactagtgacctatcaaattcctgctgctgccgaccagttgttcacc
cggtcagttttggacaaagctttgaaccgacacaactatcattctcgctttcatgacctt
ctttacattgaggaaaatgcacaaaataaagagataagcaagtttaatgtcaaagcaaat
ttgcacataacgacatcgtatgtggttcctggcaatcatggtgctgctcggcatgttcag
aatggtcaactatttgcttgtgttttgttgaatgatactgtgataaccaaagacactgct
gtgggaagactggtaatggaaaaagtcacgagtgttctgctgatcccactcagcaaaaaa
aagggtcttggatcaaatcagggaaataaagaaaaagtgtacgaagtccttgtggaagat
cggtccagggagtgtatgttgctgaggctttccaaagagtgctgtgaggatctgaagctt
cgaccagagagagacatagaggtggagcttcagtttcagttgaaccgtttgtctctctgt
gagatgcacctagcattggataatctgaaagactgcagcctggtgtccccagatgtttct
tctcttctaacacttgatttgccagatagggactgggaaaagcagctggaccctaggcta
aactccaaacagaggaaagcagctagtattattacagctcccatattgttcagtctacca
ccgattcttctgactgggccgtgtggcactgggaaaaccttcactttggcacatgcagtc
aaacaattggtgaaagaccctgacaaaagtctcaggattctgttctgtactcattccgat
actgcagcagacaactttataaaggactacctcgttcctatgtttgaaaatgatgccagt
aatcttacacttctcagaatctatcacaaaaccaaaaatgtgaaaactgtgcatcccaca
gtacagcggtattgtctacttgctcggaaccagtctgcattcctgctgccaaggaaagaa
gacatactcaagtgtcaggtggttgtggcaactgtgagttcatcaaaatacctctgttgt
gctgacctccaacatggctacttcacacacattttagtggatgattcttctcgagctatt
gaatgtgaatccattatggcgcttgggttggctgataaaaccactagaatagtcctggct
ggagatcctatgcagctcaatcctgtcgtttatagtgaatttgctcgggagcgaaacctc
catatttctttgatcaaacgcttatcacagctctatccacctgattcctgctatcatata
tcactagaagaacagtacagatcacatgaagtcatcatcagtcttgcatctgaactattc
tacaaaggaggccttacggctaacagcaaacagccaattcacaaagatttttatcccctc
atgttttgtgtggcctggggagcagacgtacaagacaaaatcagtaccagctattacaac
tgttctgaggttttggaaatagctgagcaagtggaagaattgcagaaaagatggccagtg
gcctgggggaagctggatgaaaatagcataggagttgtgacgccatatgccaatcaagtc
atgcgaatccgtgcagagatgcagaaaaagaaacttaatgacgtcactgttgaacaggtt
ttgaacatacaaggtaaacaattccgagtcctgtttctaagcacagtcagaacacggcac
acctacaaagacccaccagcatcagtgagacgaagagatgctcagcttgaagagtccgct
gaagatttggagtatggattcttttctagttataggatgctgaataccattctcactagg
acacagtcccttgtggttgtggttggagatccagtagctctctgttccattggcaaatgt
cggaaaatttgggagcatttcatcttcgtttgtcacaaaaatggaagcctccatggaacc
accttacatgagattaagacacagcttgacaacttggaactcagcagaggatgtgtgctc
aaccccctggctcctgaattcatccctcgaaccattccaaattttacagctttttctggc
agactccaggcgtcaccagcaaagacttgttctcaggtaacctggttgggataccagaac
agattagcattagacccgaggaaggctttcacctggtccttataa
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