Hemiscyllium ocellatum (epaulette shark): 132825878
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Entry
132825878 CDS
T09720
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoc03021
]
132825878 (setx)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132825878 (setx)
5.6.2.5 RNA 5'-3' helicase
132825878 (setx)
Transcription machinery [BR:
hoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132825878 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
AAA_22
AAA_16
ResIII
nSTAND3
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
132825878
NCBI-ProteinID:
XP_060697454
LinkDB
All DBs
Position
21:52664293..52774955
Genome browser
AA seq
2784 aa
AA seq
DB search
MSTCRWCTPQGKTTLQFLHLYSSEELPPQEFQAANEDLCFCLECVVDYHQARDQLPLMHT
YLWKLETKRLIEHFENALKEEQEEDDELFLIEDEQEIQLHGYTGPDFENNLRVPTLEILK
YPYLLLHERLSELFVEALSKMEQVNFSFQAFEMYPGIYLLLVHPNETIRRWAILAAKSLG
KVERDDFYDLQEVIACLLKVIELDLFENTDFYNSYGIEEGKLILLPPHLYDVTNHKNYWL
GICMLLMVLDEQAMDSLLLAQDKQNDFVKSVLNTMMKSIPDDVSDPFWPALQCFMVILDR
LGSKVWGQLIDPTEAFQAIIGSQSYNNEIEKIRNTRNNTKVKYDTDDDNMVSCSQIVYDY
NSKRESKDPGWKNAICPDYYPNMYDEMQTLVNVLQCDVGQDLRVHNSTFLWFIPFVNSVM
DLKDLGIAYIGEVIHHIYSEIKDVLNRKVPFCDKVTEFFILILVSVVELHRNKNNLHLLW
YSSQKWVEALVKCAMLPARVFNQNSEKAAGTSNVKVTSTTFAAMSSAACSCITSSVQQAC
VQLIRSFLKEGCQSQQRNMFQQFLDKLNRQLRSSFILGWQLSPKEQQELQSCLTQFIKNS
KNKTAEMKQMDTVGRGSGLKGPLIKCEKDPEEWGKMPAYYNSGPGPPSPSMLKLDCKSSA
IPQAIPNQEEIADHKSLENKPEESSEEAVLPFKTEFILYDDITFLNKINSDSSNTHEEEL
PTHMTKMETSPPPRSHSLDDVTVDDPQSRQRQIQEQAGGPAPTSTSNVNFSTSSLDKNNL
QAEPLEVTHSVPRKEKWKRSMLLEFQESMNKNSTEPEAVCSEKDQHVISHVSSTSDHAGT
DCDLPQTLESVSAGPSKFKIDPSKLLNLKVKMQAINLKMKEINNSLSKERTFEKIADAGA
DNRQSDKMNNRNSSQVPNDSKNQITDDKTTENLCSSQVRTAQLSPISDKRAKSQSSDLLL
SPLPESSSTSKFPGLSNPLHSCHSNSSDSDDDIPFSLLRLKLKRRISSTSKVNRNDSKED
EDFKPSPAVPAVSANLCSELPTIQSLNKVDRKVKAFCQGQLCNSIQNKENFESDSTMNKP
TEDNNAELITISDSETSKESTSSFIVSTSEAKKKDNATSIQCVSGIIEENQSCLQEKSVC
NKFPPVFENDSQFFEFESEEQVYSVWEDSQPQQEKANDKKKTQLDDEFHRQSDEEEINGM
LNEWGYDTDYVSDELIEKVAEEAEASLKGEQNRKRSSLDTEKQFSPRVSSLSSSAAKDTP
IDKSNVQHSGFTDDIVSNLQNEKEICIISDTDSLRSLIRSDKYKWTSKPTKELPDYQQGS
KLTVKNRADKDGFKNNLVSSNARAGEKQLSKATSSKDSNKSILKKQSQTRPDQKTRFKNK
TSKNSKEKASLVSLTNICKSLARDVQMEVPSTSGKHHSSSLPKKVRKRPEPTSTVEKLGL
KKKVRKAFDLSQGSLDTLNKLRTYGQKKGAIEHKHIKKAKLISPQKLTVRTNQRLLVSQD
RQYLRQSKLQLSNNEKKRKCTSTHDESAFPKKAVSTEGNFSFISATVQRSQKHKSASVET
DNIYVAAPILLEKKRSKTIDVASTQQKLSSINAVDDLNLTQHDPLDMDVSTDESLDDNEL
MLTQRDPIDMDIDDGNSEEEDSRRAPLSANETRCQYTGCSDIIVSSEKFCKQHSLNEPKD
IFPKPELPPSIWKSPKPTTTKLFASSSTSRNAQLATEMQCVPKRPGGATSKVQQVQRSSV
ANLASLASKPTPIMKTVETPNVLRTLNKDMNFRAQPSFQTSVTALPTNAPLPPWKSRQAS
PNVNLDLTEHRNRDQSYLINAVLKWDYQMFDSLNQFGVPDSLCEIPTREVPEKFRSYEEY
FQTFYPLLMLNLFEQLAQKLKESKQTNRMIHNSLTLKNYRVAGKIYCAEFQVSLRDHQIE
KQLHPKEDDVVFLWLPQNQNYYMQEEGEIMNNNPVPHISHISKTSRFSTGRDSLTTLHLS
IQTRGNVSAVKNQPVRCDVIGSLVTTLRQFKGLLFLAKTPLIRPILSANSIYFIQKGFVE
RPKLGNTDDYNEHQQKAIHTAYAMVKQPRIPNICLIQGPPGTGKSKTIVGLLHRLLNEEQ
ENVKPSDSRNLRSKRTRILVCAPSNAAIDDLMKKIIVDFKSKCKDKNNALGNCGDVNLVR
LGCEKAIHSDVMKFSLDYQVNHRIKRGQYDADQRRKDWLDRKLDELGKRCAIIKKDKEQI
EMATREKRQLEKEREELGRKLKELRGQTQDMQLNIILEAHIICCTLSTCGIMLLEMSFRK
LGHEPFSCIVVDEAGQACETEILIPLIYRCPKLVLVGDHEQLPPTIISMKAKELRYGRSM
MCRLQMSLQNEVKQNNSGQSPVIMLLTQYRMHPDICHFPSKYIYRSLLKTDEKTEMQRCS
LTWPFQSYMLFDVTDGYECRENDSYTNAQEVKLVIALISMIAEKQKGICRNIGVITPYNA
QKQKIMNQIDQESRTAGLEQGRTVQVGTVDGFQGCEKDCIIVTCVRASNFQGSIGFLADR
QRLNVTITRARLSLFILGNLKTLLENKDWKALIQDAQKRGAIVKTSESDYKKDCQKILKP
RSIVQRSISDPAALTGEQKQVPDLAWKSSWNETSMPSAADVRCGQFPKTLIPSQSVSKHH
LHYAQSSVTAQPETSVRSELSAQDKPRDPRLARRALLKETQPQLKITRTFSESRVVNSPD
SSASGGGHGAIHSSNISQPPRNSLSRIDVDKPYPSPLNRSLTFPSGTSGCRNDQNTVYNV
SNCAGSWKQQQDEVAKGDRSGEQK
NT seq
8355 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttgtcgttggtgcacaccacaaggcaagacaacacttcagtttctacatctc
tacagttctgaggagctccctccacaggaatttcaagctgctaatgaagatctttgtttt
tgcctggaatgcgtggtggactatcaccaagcacgcgatcaactcccattaatgcacacg
tatttgtggaaactagagactaaacgtctgatcgagcattttgaaaatgccctgaaagaa
gaacaggaggaagatgatgagttgtttctaattgaggatgagcaggaaattcaactccat
gggtacacgggaccagactttgagaacaacctaagggtacccactctggagattctgaaa
tacccttatttactgcttcatgaacggctaagtgagttgtttgttgaggccctcagtaaa
atggagcaagtgaatttctcctttcaggcgtttgaaatgtatcctggcatctatctgctt
ctagtacatccaaatgaaacaataaggagatgggcaatccttgctgctaaatctcttgga
aaggtggagcgagatgatttctatgacttgcaggaagtgatagcttgtctactaaaggtc
attgaactggatctttttgaaaatacagatttctataacagttatggaatagaagaggga
aaattaattcttttaccaccccatctttatgatgttaccaaccacaagaactactggctt
ggtatctgtatgctgttgatggtattggatgaacaagctatggactcgttactacttgcc
caagataaacagaatgacttcgtgaagtcagttctaaacaccatgatgaaaagtatacca
gatgatgtttctgatccattttggccagctctgcagtgcttcatggtaattctcgatcga
ctaggatcaaaggtttggggccaactcattgaccccacagaggcattccaggctattatt
ggtagccagagttacaacaacgagatagaaaaaattcgtaataccagaaacaacacaaag
gtaaagtacgatactgatgatgacaacatggtttcatgcagccagattgtctatgactac
aactcgaaaagggaaagcaaggatcctggttggaagaatgctatctgcccagattactac
ccgaacatgtacgatgaaatgcaaactctggtgaatgtgctacagtgtgatgttgggcaa
gatttgcgtgtacacaacagtacctttctgtggttcatcccatttgttaactctgtcatg
gacctaaaggatcttggcattgcctacataggagaagttattcaccatatttactcagaa
ataaaggacgttttgaatcggaaggtgccattttgtgacaaagtgactgaatttttcatc
ctcatcttggtatctgttgtagaactccacagaaataaaaacaatcttcatttgctatgg
tacagctcgcagaagtgggtagaagcactagtgaaatgtgccatgcttcctgccagagtg
tttaaccaaaatagtgagaaagctgcaggaacaagtaatgtcaaggtcacatcaaccacg
tttgcagcaatgtcctctgcggcatgttcctgtatcactagctcagtccaacaagcatgt
gttcaactaattcgtagttttctgaaagagggatgtcagtcacagcaaagaaatatgttc
cagcaatttcttgacaaactaaatcgacaattgcgaagcagctttattctaggctggcag
ctaagtccaaaggagcaacaggaattacagtcctgtttgacacaatttattaaaaattca
aaaaataaaacagccgaaatgaaacaaatggacacggttggaagaggaagtggactgaag
ggccccctgattaaatgtgaaaaagacccagaggagtgggggaaaatgcctgcatattac
aatagtggtcctggtccaccatctccttcaatgttaaaattagactgcaaaagttcagct
attccccaagctattccaaatcaagaagaaatagctgatcacaagtctctagaaaacaaa
cctgaagaatcatctgaagaagcagttctcccatttaagactgaattcatcttgtatgat
gacattactttccttaataagatcaattctgattcttctaatacacatgaagaagaatta
cctacacacatgaccaaaatggaaacctctcctccccctcgttcccattctttggacgat
gttacagtggatgacccacagagtagacaaagacagattcaagaacaagctggtggaccc
gcacccacatccacttccaatgtgaattttagcacaagttccctggataaaaataatttg
caggctgaacctcttgaagtcactcatagtgttccacgtaaagaaaaatggaaacggtct
atgctactggagtttcaggaatctatgaacaagaattccacagaacctgaagctgtctgt
tctgaaaaagatcagcatgttatttctcatgtctcttcaacttctgatcatgcaggaact
gattgtgatttgcctcaaacattggaatcagtcagtgctggaccaagtaagtttaagatt
gatccaagcaaacttctcaatctgaaggtaaagatgcaagcaattaatctcaagatgaaa
gaaattaataattctttgagtaaagaaaggacatttgagaaaatagctgatgcaggagct
gacaataggcaatcagataagatgaataatagaaactccagtcaggttcctaatgacagc
aaaaatcaaatcaccgatgacaagactactgaaaatttgtgctcctcacaagtgcgtaca
gctcaattgtctccaatttctgacaaaagagccaagtcacaaagttctgatttattatta
tctcctctgccggaatctagcagtacatccaaatttcctggtctgtcaaacccacttcac
tcttgtcatagcaatagcagtgatagtgatgatgatattccattcagtttattaaggctt
aaacttaagagaaggatttcttcaacttccaaggtgaatagaaatgattccaaggaggat
gaagactttaagccctcaccagctgtccctgccgtaagtgctaatttatgcagtgagctt
cccacaatccaatcactgaacaaggttgataggaaagtaaaagctttttgtcagggacag
ttgtgtaattccattcagaataaagaaaattttgaatctgactcaacaatgaataagccc
accgaagacaataatgcagaattgataactatctctgattcagaaacatcaaaagaatct
accagctcattcattgtttctacctctgaagcaaagaaaaaagacaatgctacctctatt
cagtgtgtctctggcataattgaggaaaatcagtcatgtttgcaagaaaagtcagtgtgt
aacaaattcccccctgtctttgagaatgattcccagttctttgaatttgaaagtgaagaa
caggtatattctgtttgggaagattctcagccacagcaagagaaagcaaatgacaaaaaa
aagactcagcttgatgatgagtttcacaggcaatctgacgaagaagaaattaacggtatg
cttaatgaatggggctatgatacagattatgtatctgatgaattaattgaaaaggttgcc
gaggaggcagaagcaagtttgaaaggagagcagaatagaaaacggagtagcctggacacc
gaaaagcaattctcgccaagagtttcttctctgagcagctctgcagctaaagatacacca
attgacaaaagcaatgttcaacattctgggtttactgatgatattgtctctaaccttcaa
aatgagaaagaaatctgcataattagtgatacagatagcctcagatctctaattagatct
gacaaatacaagtggacatccaaacctacaaaagaattgccagactatcagcaaggaagc
aagctaactgtgaaaaatagagcagataaagatggctttaaaaataatcttgtttcatca
aatgctagagcaggagaaaaacaattatccaaagccacttctagtaaagattcaaacaag
tccatccttaaaaaacaatctcagaccagaccagaccagaaaactaggtttaaaaataaa
acaagtaaaaattcaaaggagaaagcatccctggtgtcattaactaatatttgcaaatca
cttgccagggatgtacaaatggaagttccttcaacttcagggaaacaccattctagctca
cttccaaagaaggtgcgaaagcgtcctgaacctacatcaaccgttgaaaaacttggcctc
aaaaagaaagttcgtaaagcatttgatctttctcagggcagccttgacaccttgaacaaa
ttgcgtacttatggtcaaaaaaagggggctattgagcataaacacattaagaaggcaaag
ctcatttcaccacagaaattaacagtacgtacaaatcaacgattactggtttctcaggat
cgccagtacctaaggcagtctaagcttcagttaagcaataatgagaagaaaaggaaatgt
acatctactcacgatgaaagtgctttcccaaaaaaagctgtgtcaactgaaggaaatttc
agctttatttctgctactgtacaaaggagtcagaagcacaaatccgcttcagtggaaaca
gacaatatttatgttgcggctcctattttgttagaaaagaagcgtagtaaaacaatagat
gtggcctcaactcagcaaaaactgtcaagtattaatgcagttgatgacttgaatttaaca
cagcatgatcctttagatatggatgttagtacggatgaaagcttggatgataatgaatta
atgttgacgcagagggatcccatagacatggatatagatgatggcaactcggaagaggag
gattccagaagagcacctttaagtgcaaatgagaccagatgtcaatacacaggatgctct
gatataattgtatcttcagagaaattttgtaagcagcattctctaaatgaacccaaagat
atctttcctaagccagaattacctccatctatttggaaaagcccaaaacctacaactacc
aaactgtttgcttccagctctacctcacgcaatgctcagcttgctacagagatgcagtgt
gtcccaaaacgtccaggaggagcaacttccaaagttcagcaagttcaaagatcttcagta
gcaaaccttgcgtcacttgcatcgaaaccgactcctattatgaagactgtggaaactcct
aatgttcttcgaactctaaataaagatatgaatttcagagcacagccaagttttcaaacg
tcagttacagcattgccaacgaatgcacctctgccaccttggaaatccaggcaagcttca
cctaacgtcaacttggatctgacagaacatcgaaaccgtgaccaatcttatcttatcaat
gcagtccttaagtgggattatcagatgtttgattcattaaatcaatttggggtacctgat
tctctttgtgaaattccaacacgcgaggtgcctgaaaagtttcgctcatatgaagaatat
tttcaaactttttaccctttactgatgttgaatctttttgagcagttagctcagaaactg
aaggaatccaagcagacaaatagaatgattcataattctttgactttgaagaactatcgt
gtggcaggaaaaatatactgtgcagaatttcaagtttctctacgtgatcaccagattgaa
aaacaactacaccctaaagaggatgatgttgtgttcctgtggttgccccaaaatcagaat
tactacatgcaagaagagggcgaaataatgaataataatccagtcccacatataagccat
atctcgaagacatcgcgtttttcaactggtcgtgattcattgacaactcttcacctttca
atccagacgagaggaaatgttagtgcagtgaaaaaccagccagtgaggtgtgatgtaatt
ggttcccttgtgaccaccttgaggcagttcaaaggattgctttttctagccaagacgcct
ctgatcaggccaattctttcagcgaattctatatattttattcaaaaaggttttgtggaa
cgtccaaagttgggcaatactgatgattacaacgaacatcagcagaaagctattcacacg
gcttatgcgatggtgaaacaaccaagaattcccaatatctgtctcatacagggacctcct
ggaacaggaaagtcaaaaacaatcgttggtttactgcatcgtttgctcaatgaggaacaa
gagaatgtgaaaccatctgacagcagaaacttaagatctaaacgaaccaggattcttgtg
tgtgcaccatcaaatgcagctattgacgatctcatgaaaaaaatcattgttgattttaag
tcaaagtgcaaagataagaataacgcattaggcaactgtggggatgtgaacctggtaaga
ctaggctgtgagaaagctatccactcagatgtaatgaagttcagtttggattaccaagtg
aatcataggatcaagaggggtcaatatgatgctgatcagaggcgaaaggattggttggac
aggaagctagatgaactggggaagagatgcgccattatcaaaaaagacaaggaacagatt
gaaatggcaacacgagaaaagagacaattggagaaagagagagaggaacttggacgcaaa
ctgaaggagcttcgaggacaaacccaggacatgcaactaaacattattctggaagcacac
atcatctgctgcactttgagtacctgtgggattatgcttttggagatgtcattccgaaaa
ctgggacatgaaccatttagttgtattgttgtggatgaggctgggcaggcatgcgaaaca
gaaatactgattcctttgatatatcgctgtcctaaacttgttcttgttggagaccatgaa
cagttgccaccaaccataatctccatgaaagcaaaggagttgcgctatggccgatcaatg
atgtgtcggttgcaaatgtccctgcagaatgaagtgaagcagaataattctggacagagc
ccagtaatcatgctattaactcagtacaggatgcatcctgacatctgccattttccctcc
aagtacatctatagaagtttgttgaagacagatgagaagacagagatgcaacgttgttct
ctgacctggcctttccagtcatacatgttgtttgatgtgacggatggatatgaatgccgg
gagaatgattcttacaccaacgcacaggaagtgaaactggtaatagctttgatcagtatg
attgcagagaaacaaaaaggcatttgtcgtaatattggagtgattaccccctataatgca
cagaaacagaaaatcatgaatcagattgatcaagagtcgagaactgctggccttgaacaa
ggcaggacagtgcaggtgggcacagtggatggatttcaaggctgcgagaaggactgcatc
attgttacctgcgtcagagcaagcaattttcaaggatctattggattcttagcagaccgg
cagagactgaatgttacaattactcgagctcgtctgagtctcttcattctgggaaatctg
aaaacactcctggaaaataaagattggaaagctttgattcaggatgcacagaaaagagga
gccatcgtgaaaacaagtgaaagtgattataagaaagactgccaaaaaatattgaaaccc
aggtctattgtccagagaagtatttctgatccagctgcattaacgggtgaacagaaacaa
gttcctgatcttgcatggaaaagctcatggaatgaaactagtatgccttcagcagctgat
gtcagatgtgggcaatttccaaaaacactgattccttctcaatcagtttcaaaacatcat
ttgcattatgctcaatcatctgttactgcacaacctgagacatcagttaggtcagagctg
tctgctcaggataaaccgagggatccaagactggcccgaagagctttactcaaagaaact
cagccacaattaaaaatcactcgtactttttcagagtcgcgtgtagtaaattcaccagat
tcctctgcatctggtggtgggcatggggctattcattcttcaaacattagtcagcctcca
agaaattctctttccaggattgatgttgataaaccttatccttctcctctgaacagaagt
ttgacctttccttctgggacttctggatgtagaaatgatcagaatacagtctacaatgtc
agcaattgtgcaggttcctggaagcaacaacaggacgaagtagcaaaaggagataggtct
ggcgaacagaaatag
DBGET
integrated database retrieval system
