Hemiscyllium ocellatum (epaulette shark): 132826328
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Entry
132826328 CDS
T09720
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132826328
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132826328
NCBI-ProteinID:
XP_060698152
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All DBs
Position
22:complement(46897289..46982796)
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AA seq
1554 aa
AA seq
DB search
MSGVRNYQKLNHEDCMDSGIFEIENSRNRKIDGGGYSDNVVTEVITTKVTSLPPRGTYSS
TGSSSRRQIVTGGAGTEGTITSYNSIQGRGTAGGYSRTRFPSSTLSISPDTTLERKTFVS
RNGGYEGSSSGNSSPEFSRKEFSTSNTRGRSQSRESAIRARLQSASPSGRWTELDDVKRL
LKGSRSASISPPRTATNTLPYPKKAVVETKMVSASTQSVSGRYDTAILNAALPAYIWTTP
VPAGGSNIGVTEYHNNLSSAGTQVFNTTGSTSLMANEIQNNKATSSVTGTVGVTTSTVQG
VQNNLTATPSLVTSPTQTQTQTQTNSSSAVGMQKNLVLNSSGVTTGQTSSTVGSTGTNDI
LQKDYKFLLLEKENTPPKKDTELLIMTKDSGKLFTASPATFTASTTDDTLKKETMGMSST
APRLNGQTNGGLKMATKDKATYAEIRSSEENMGSLPSWCSCCRCCTWWKWLLGLLLAWLL
LLGLLLGLIALAEEVRKLKSRVSELESRPTFGKLISDDVNIPKKESDNQLGTAAGGSETN
IEHNLWNRIKNKLDTSEYQESVRGRQGPPGIKGEQGFPGIPGPMGPHGAPGHDGQRGPKG
NTGEPGEKGAKGASGDSASFAKGERGEPGLPGLPGLPGMKGPSGPVGPQGPPGSSGIKGD
TGHPGPKGEKGLSGIPGSKGDMGERGSRGLQGEPGPRGQPGVAGEPGQKGSTGSQGADGH
RGLRGEPGVRGLPGLPGTAGPPGQPGAPGKVINYGGSNGKPVVQGPPGPPGPPGAPGRSG
ESIAGPPGPAGPKGASVEGPRGPPGLPGAAGVPGPRLPGPAGPPGPPGPRGEAGQPGLPG
ASGRGDSYLPGPPGPPGPPGPPGRKGDRGDRGDVGIPGAPGIPGRSSRVTSTEGGLQGPP
GPPGPPGPQGPPGESGSTSRTNVRQTVMEYLQTDGVRRSIAGPPGPPGPPGPKGDRGAIG
RQEYSEISNKVIDYMRSSGVGFGARGPPGPPGPPGTMSTADLNLYLQNEDIQRYLRGPQG
PPGAPGPRGDGMSRAELEAYITDYTRSWAAGSGRPGPPGPPGVPGTPGTISLSGDLSVML
QDENVRRYLMGPPGPPGPPGRPGYSASEGTTNVRLNYQDIATRVQDYMRSSGMSFGVQGP
PGPPGSPGTVSSTELMALLQTSPFRRILGQPGPPGPRGLPGPAGPPGLGGGNFRIEDVVS
YIQNSGYSIAGPQGPPGPPGPPGSPGTGGGLYPEDRQQMKSEIIEYFSSDRMRPYITGPA
GPPGPPGHIVYSEVAPRLAQYMKDNGLIDTRTIIIGGSGRHRVFWQDGTDRNKTELEEYL
RDYGVDLGSVNGGQGNVQGEGGNTWSVHTSHSSSQPSGVPGASGRFVFDWENAFNGNRTA
YEKYLRENGWTVYRSPGSRESGTSGVLEDNWEKFFNGNRTAYEEYLRGFGAHSAASGSGA
RRTGGASRSHHSSSSFSNQSDGSGTHRVSETSHSSSSQSSASSSSHSSGGVWHDGTYRSD
AELEEMLKEKLGESYATWLSHANLKMQSDQKERRRKSTGRSSHRRTRRRAHGLK
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtgtacgcaattatcagaagttgaatcacgaagattgcatggacagtggtatc
tttgaaatagagaacagcagaaacaggaagatagatggtggaggctactcagacaatgtt
gtcacagaggtgataacaacaaaagtgacctcactcccaccacgaggcacttacagtagc
actggttcttcctcgcgacgccagattgtcacaggaggggctggtacagagggcaccata
accagctataacagcatacaaggacgaggcactgccgggggatattcacgtacccgattt
cccagttccacactttccatttcaccagatacaacgttggaacggaaaacgtttgtcagc
cggaatggaggatatgagggaagttccagtggcaattcctccccagaattctctcgaaaa
gaattcagtacctcaaacactagggggaggagtcagagtcgagagagtgcaatccgggcc
cggctgcagagtgcttcaccatccggacgatggacagagttggatgatgtgaagcgattg
ttgaaaggcagccgttcggccagcatcagtccacctcgcacagccacaaacaccctgcca
taccccaaaaaggccgttgtggaaaccaagatggtgagcgcaagcacacagtcagtgtct
gggagatatgatactgctatcctgaatgctgctttacctgcctacatctggactacgcct
gtaccagctggtggctccaacatcggagtgacagagtatcacaacaacctctcctcggct
gggacacaggtgttcaatacaacaggatccacctctctaatggcaaatgaaatccagaat
aacaaagctacaagctcagtgacggggactgtgggagtgaccacttcaacagttcaaggg
gttcagaacaatctaacagccacacccagtttggtcactagtccgacacagacacagacc
cagactcagactaactccagctcagcagtggggatgcagaagaaccttgttttgaattcc
agtggtgttaccacgggccagactagctccacagtgggctccactggcactaacgacatt
ttacagaaagactacaagtttttgctgctggagaaggaaaatactcctcccaaaaaggac
acggagcttctgatcatgaccaaggacagcggcaaactcttcaccgcgtctcctgccacc
ttcactgcgtcaaccacagatgacacattgaagaaagagacgatggggatgagcagcact
gcaccaaggctgaatggtcaaacaaatggaggtttgaagatggcgactaaagacaaggca
acatatgcagagatccgatcaagtgaggagaacatgggctccctgccttcctggtgctcc
tgctgtcgctgctgcacgtggtggaagtggctgctgggactgctgttggcctggttactg
ctcctaggcctcctgcttggccttatcgcactggcggaagaggtgaggaagctgaaatcc
cgtgtcagcgaactggaatcaagaccaacctttgggaagctgatttctgatgatgttaat
atcccgaagaaagaatcagataatcagctgggtacagcagctggtggctcagaaacaaac
attgaacataacctatggaaccggataaaaaacaaattagacacctcagaatatcaagaa
tcagtgcgaggacgacagggtcctccagggattaaaggtgaacaaggatttcccggaatc
ccaggtccaatgggccctcatggagctcctggacatgacggtcaaagaggaccaaaagga
aacacaggtgaacctggagagaaaggggcgaagggagcttcaggtgattctgcgtcattt
gcaaaaggagagcgaggtgaaccaggtctacctggtcttccaggactaccaggaatgaaa
ggtccctctggaccagttggtcctcaaggtcctccaggatcttcagggatcaaaggtgac
actggccatccaggtcctaaaggtgaaaaaggattgagtggcattcccgggtctaaaggt
gatatgggagagaggggttctcgtggtttacaaggtgaaccaggtcctcggggacagccc
ggtgtcgcaggagaaccagggcagaagggatcaaccggatctcaaggagccgatggtcac
cgtggactccgaggtgaaccgggagttcgaggtttaccaggattaccaggaactgctggc
cctcctggtcaacctggtgcaccaggaaaggtcattaactacggtgggtcaaatggaaaa
ccagttgtacagggaccaccaggacctcctggaccaccgggagccccaggacgatcaggc
gagagtattgctggaccaccaggacctgcaggtcctaaaggggcctctgtcgaaggacct
cggggaccacccggactgcccggtgctgctggtgttccagggcctcgattacctggacca
gctggacccccgggacctcctggacctcgaggtgaagctggtcaaccaggattacctggt
gcctctggccgtggtgattcataccttcctggccccccaggaccaccaggaccccctgga
ccccctggaaggaaaggtgacagaggtgacagaggagacgttggaattccaggggctcca
ggtattcctggaagatcttcacgagttacgtcaactgaaggaggccttcaaggaccccct
ggacctcctggcccaccaggaccacaaggacctccaggagaatccggatcgacctccagg
actaacgttagacagacagtgatggaatacctccagactgatggtgttcgccgatcaatt
gcgggaccaccaggaccacccggaccacccggtccaaaaggagatcgcggagcaatcgga
cgtcaggaatattcggaaatctccaacaaagtcattgactacatgagaagttcaggtgtg
ggtttcggtgcaagaggacctccaggacctcctggccctccaggaactatgtcgactgct
gatctgaatctctaccttcagaatgaggatatccagcgatatcttcggggtccccaagga
cctcccggagcccctggcccacgaggggatgggatgagtcgggcagagctggaggcttac
atcaccgattataccagaagttgggcggctgggtcaggccgacctgggcctccaggaccc
ccaggagttcctggtaccccaggaactatttcgctatccggggatctcagtgtcatgctc
caggatgagaatgttcggcgatatttgatgggtccaccaggacctccaggaccccctgga
cgcccaggttattcagcatcagaaggaacaaccaatgttcggctcaattaccaagacatt
gctacccgtgttcaagattatatgaggagttcaggaatgagttttggggtccaaggacca
cctggtcctcctggatcaccaggcactgtgtctagcactgagctgatggctcttctacag
acctctccctttaggcggatccttggacagccgggacctcctggaccacggggtctgcca
ggaccagctggaccccctgggcttgggggtggaaacttccgcattgaagatgtcgtttcc
tatattcaaaactcgggttatagcatcgcaggccctcaaggacccccaggaccaccaggg
cctccaggatcaccaggaactggaggaggtttatatcctgaagatcggcagcaaatgaag
agtgagattattgaatatttctcaagtgatagaatgagaccatacattactggaccagca
ggaccccccggaccccccggacacattgtatattctgaagtagctccacgccttgctcag
tatatgaaagataatgggctgattgatactcgcaccatcatcattgggggttctggtcgt
cacagagtattctggcaagatggaacagacagaaataagaccgaactggaggagtacctg
agagattatggagttgatctggggtcggtgaatggaggacaagggaatgtccagggtgaa
ggaggtaacacgtggagtgtgcacacgtcacatagttcatcccaaccatcaggggtacct
ggagcgtctggccgttttgtgtttgactgggagaatgcattcaatgggaacaggacagct
tatgagaaatacctccgagaaaatggctggactgtgtacaggtcacctggctcaagagaa
tctgggacatctggcgttctcgaagacaattgggagaaattcttcaatgggaacaggaca
gcatatgaagaatacctgagaggttttggtgcacattcagcagcatcaggaagtggtgca
agacggacaggaggagccagtcgatcacaccattcgtcatctagcttctccaaccagtca
gatggatctggaactcatcgtgtgtctgaaacgtcacacagctcttccagtcaatcatct
gcctctagttcttcacattcctcaggaggagtttggcatgacgggacctacaggagcgat
gcagagttagaggaaatgctaaaagagaaacttggggaatcttatgccacatggctatca
catgccaacctcaagatgcagtctgatcagaaggaaaggagacggaaatctacaggtcgg
tcttcacacaggcggaccagacgacgagctcatggtctaaagtga
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integrated database retrieval system
