KEGG   Hemiscyllium ocellatum (epaulette shark): 132826331
Entry
132826331         CDS       T09720                                 
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
  KO
K14792  rRNA biogenesis protein RRP5
Organism
hoc  Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:hoc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:hoc03009]
    132826331 (pdcd11)
Ribosome biogenesis [BR:hoc03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    132826331 (pdcd11)
SSDB
Motif
Pfam: S1_RRP5 S1 OB_PDCD11 Spt6_S1 HAT_PRP39_N HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_Syf1_CNRKL1_C Suf OB_RRP5_4th TPR_14 PRP6_TPR TPR_19 CFAP70_mid_TPR DUF8501 CFAP70_TPR_C TPR_YpiA_C TPR_12 ARM_TT21_N TPR_15 ARM_TT21_5th NRDE-2 TPR_CcmH_CycH DUF7017 TPR_6
Other DBs
NCBI-GeneID: 132826331
NCBI-ProteinID: XP_060698158
LinkDB
Position
22:complement(47318337..47378028)
AA seq 1834 aa
MIVGSVSADSESLTVTFVLSNIVAKMAAMDKDFPRGGVQRNPTREKVKRSVEDENLFKMH
DDDVKKKQKKKKESIPVEAKKQKTKNGGTSQTNQRNKAQCLSLKDMNVGMLLLGCVKEVT
DFELVIGLPHGLTGYVSLTNICDAYTKSLREQVDEELTEDLVVLSDLYSPGMVIRCVVYE
LGKTNSNHPSLRLSINPKDVNKALSPEALQAGMLLSGCVSSVEEHGYLVDIGVKATKAFL
SHMKTQEFIKSRNRGMPLRVGQYLTTLVESVKNDGRIAQLSIRHTDVAAATATEDQKWSL
SNLLPGLIIKAEIQKVDTCGLILQFNSGLSGTVDFMHLDSRRVRTYHPGQQVKACVLYVQ
PETKAVHLTLRPAFLQPGAMLQEPCPHRIGKIFEQCTVRSYYKGAGVIFQLDDGTFAYSP
KSHLSGTTMPFDPKDFSEGSRHRCRVIDHSPMEQMALVSLRKSILDAQFLKYQDIKLGQL
VEGKITSLESYGMHVKLTDHIQGLVPHTHLSDIPLKHPEKLYSVGNLVKCRVLMVNSDTK
KLTLTLKKTLVGSKLSVITQYKEAVPKRLAHGYIVSVKPYGCIVSFYGDVRGLVPQQELS
TQPIPFPEKVFYVGQVVKVIVLKCDPTQEKLLLSMKTTQKVGTDADESSMYPTGKIVDVE
VLVKVENGLKVSILPQRSPAFLPTVHLSDYVSNCQLLAERLQKGDILSNVMCLSQAHGQI
ILCRKAAVIAFAKQAPLPKDVLELQVGMQMPGFVKNIMTYGVFVEFPHGLYGLAPKAAIS
DKFVTNIEDHFVVGQTVVAKITNLDEEKKRVLLTLKVSECGSGEEDDESLALLSQYCREL
EFVRTLMSSRDSPVAVSLSRLATGQRLQLVVSRVVGDGTMYFTGTEVTKHTVTASRYHQE
GVSLSPGQQCTAVVVFVDLLSSTVHVSLRQELLNADVKKLKGISQHPAVVQFVTQDVAVV
SLTGTSKLLLVPVTFHVNDTFHFDSEKLFVGQTISVSLNTAGVEHLGIPLVARGRKKHSR
VKRERQMSEEEDLTPVVQHALYVGNVVSGTVKSVQPNCLLIKLEGGVTGFVHVSEIDDCV
PDGSFPTTKQKVGNVETAKVIGGREVKSHRFLPITHPNFSMTIPVLTLRPSKLSADCELM
FQSEDLADQLKSYKPGQVLTCYVSKYNHTRKCLDVEVTPVISGSVELLLMSQKVKHLKFP
KKHFQSGQALTAKVIGPDTTNSRLSLSLTGLCSLDEGSITLGIIKKVTPHLGVTIKLPFG
KNGLVGLCDIADSYKESQFEALTPGRIVRCCVISNDEHELAVSLRNSRVYPEHESSISDP
EITSAKDLQKGQLLRGYVKAVRESGVFVSLSSSVSGRVLFNYVTDHFVKDHGIFMKNIPK
GKLVTVKVLSVKDEVELSLLPQDTGAPDVLSKSGLPLKQSKMLSNAKGTVSKTFKRKRRG
SESEQISSKKLKTSRKQKNSEEAESGVEVYFHEEDSDTEIQQQPNPRKTPVPRLEVPLGF
AWDVSLNTISPVTRKREDISSDSEEDEPEDSKAKVTKREKEVSKWQMEKELTKVEQQLMD
PNRHPQSAEDFDRLVLSSPNSSILWTQYMAFHLHATEIEKARTVAERALKTISFREEQEK
LNVWVALLNLENLYGTEESLMKVFERAVQYSEPLKVFQQLASIYTKSEKYKQADNLYNTM
LKRFRQESTVWLNYATFLLKQGKTDCTSALLQRALKCLPQKEHVDIIAKFAQLEFRLGDT
ERAKAMFESTLNNYPKRTDLWSVYIDLMVKHGNQDEVRHLFERVIHLKLAPKKMKFFFKR
YLEYEKKHGTEERVQGVKEKALKYVESTSLPVDS
NT seq 5505 nt   +upstreamnt  +downstreamnt
atgatcgtgggttcggtttcagcagattcagagtcactgacggtaacgttcgtattatca
aacattgttgcaaaaatggctgcaatggataaggatttccctcgtggaggggtgcagaga
aatcccactagggaaaaggtgaagaggagcgtggaagatgaaaacctgtttaagatgcat
gatgatgatgtaaaaaagaaacagaaaaagaagaaagaatcaatccctgtagaagcaaag
aaacagaagacaaagaatggtggtacatcacaaacaaatcaaaggaacaaggcacagtgt
ctctccctcaaggatatgaatgttgggatgctcttgctcggctgtgtgaaggaagtgact
gattttgaactcgtcattgggttgccccatgggctcactggttatgtcagtctcaccaac
atctgtgatgcctataccaaatccctaagggaacaggttgatgaggaactgacagaggat
ctggtagtcctgtcagatctgtacagccctggtatggttatacgatgtgttgtgtacgag
ctcggaaagacaaattccaaccaccccagcttgagactctccattaacccgaaggatgta
aacaaggcattatctcctgaagcactgcaagctggcatgctactctcaggctgtgtatcc
agtgttgaggaacatggctatctggtcgacattggagtcaaagccaccaaagctttcctc
tcgcacatgaaaacccaggagttcataaagagtagaaatcgaggcatgcctctccgtgtt
ggtcaatatctaaccactctggtggagtcagtgaagaatgatggccgcattgcccagctc
tcgatccgtcatactgacgttgctgcagcaacagcaactgaagatcagaaatggagtctc
tccaatctgctccctgggctgataatcaaggctgaaattcaaaaggtggatacctgcggt
ttgattctgcagtttaactctggtttgagtgggaccgtcgatttcatgcatctggattca
cggcgagtcaggacctaccaccccgggcagcaggtgaaagcttgtgttctgtatgtgcag
ccggaaacaaaggctgtacacctgacattgcggcctgccttcctacagccgggggcaatg
ttgcaggagccatgcccccataggattgggaagattttcgagcaatgcactgtgcggagt
tactacaaaggagctggtgtcatctttcagctggatgatgggacctttgcctattcacct
aaatctcatctgtctggcactacgatgccctttgacccaaaagacttcagtgaaggttcc
aggcacaggtgcagggtcattgaccacagcccaatggaacagatggctctggtttctctg
agaaagagcattcttgatgcccaatttttgaagtaccaggacattaagctgggacagctg
gtcgagggtaaaatcacctctctggagagttatgggatgcacgtgaagctaactgaccac
attcagggactggtgcctcatactcatctgtcagacattcccctgaaacacccagaaaag
ctgtacagtgtgggaaacctggtgaagtgcagggtactgatggtaaacagtgacaccaag
aaactgaccctgactctgaagaagacgctggttggttcaaagctttctgttattacccag
tacaaggaggctgttcccaagcgactggcccacggttacatcgtctctgtgaagccctat
ggctgcatcgtcagcttctacggtgatgtgcgagggctcgtccctcagcaggagctgagt
acccagcccatcccctttccagagaaggtcttctatgttggtcaggttgtcaaggtcatt
gtcctaaagtgtgacccaactcaggagaagctgctgttatccatgaaaaccacacagaag
gtgggaactgacgctgatgagtcttcaatgtacccaactggaaagattgtcgatgtggaa
gtcttggtgaaagtggagaatgggctgaaggtctccattctcccacagcgttcacctgcc
tttctcccaacggtacacctctcggactatgtctcaaattgtcagcttcttgctgagagg
ctgcagaagggtgacatcctctccaatgttatgtgtttaagccaagcccatggccagatt
attctttgtagaaaagctgcagtgatagcttttgctaaacaagcgccactgccaaaggac
gtattggaactccaggtgggaatgcagatgccgggttttgtgaagaacattatgacatat
ggagtgtttgtcgaattcccacatggattgtacggcctggctcccaaagctgctatatct
gataaatttgtcacaaacatcgaggatcattttgtggtgggccagacagtggttgccaag
attacaaacctggatgaggaaaagaagcgagtattactgactctgaaagtgtctgaatgt
gggtctggggaagaggatgatgaaagtcttgcactcctgagccaatactgtagggaactg
gaatttgtcaggaccttgatgagcagcagagattctccagttgctgtcagtttaagtcgc
ctggctacagggcagagactccagctggtagttagcagagtggtgggtgatggcacaatg
tatttcacgggtacagaggttaccaagcacactgttacagccagtcgctatcaccaggaa
ggggtgtctctgagcccaggacaacagtgcacagcagtcgtggtgtttgtagatctcctc
tcatccactgttcatgtgtctctccgtcaggagctgctaaatgctgatgtgaaaaagttg
aaaggaatttcccagcatcctgctgtggtgcagtttgtgacacaggacgttgccgttgtt
tcactgactggtacttcgaagctgcttctcgttccagtcacattccacgtaaacgacacc
tttcacttcgactctgagaaactctttgtgggacagaccatctctgtgtcgctgaacaca
gctggagtagaacatcttgggatcccgctcgttgcccgagggcgcaagaaacacagcagg
gtcaagcgagagcgccaaatgtcagaagaagaggatttgacgcctgtggttcagcatgca
ctgtatgtcgggaatgtagtcagtggaactgtgaaatccgtgcagccaaactgcctgctg
atcaagttagaaggcggcgtgactggatttgttcacgtttcagaaatcgatgactgcgtt
cctgacggctccttcccaacgacgaaacaaaaagttggcaatgtcgaaacagcaaaggtc
attggaggtagagaagtcaagtctcacagatttttgccaatcacgcacccgaacttttcg
atgactataccggtgttaacactgcgaccaagcaagctgtcagcagactgtgaactcatg
ttccagagcgaggacttagcagaccagctgaaatcctacaaacccggccaagtgttaacg
tgctatgtgtcaaagtacaaccatactagaaaatgtctggatgttgaagtcactcctgtc
atttctggaagtgtagagctgctgctgatgtctcaaaaagtcaagcacttgaagtttccc
aagaaacattttcaatctggccaggccttaaccgcgaaggtgatcggcccagacacaacc
aacagccgtctcagcctctcactcacaggtttatgttctctggatgaaggttcgataaca
ctgggcataatcaagaaggtcactccacacttgggggtcaccatcaagctcccttttgga
aagaatggtctagtggggctatgtgatatagcagattcatacaaagagtcacaattcgag
gcgctcaccccgggccgcatagtcaggtgctgtgtcatttcaaatgatgagcatgagttg
gcagtttctctcaggaactcaagagtgtaccctgaacatgagtcttcaataagtgaccca
gagattacatcggccaaggatcttcagaaggggcagctcctgagaggttatgtaaaggct
gtcagagagtctggagtctttgtcagtctctcctcttcggtgtcaggccgtgtcctattc
aattacgtcacagatcactttgtcaaggaccatggaatcttcatgaaaaacatcccaaaa
ggaaagctggtgacagtcaaagtactgagtgtaaaggatgaagtggagctctcgctcctc
cctcaggacacaggagccccagatgtgctgtcaaagtccggcttaccattgaaacagtcc
aaaatgctgagtaatgcaaaagggacagtctcaaaaaccttcaaacgcaagagaagaggt
tcagagagtgagcagatttcctccaaaaaattgaaaacaagcaggaaacagaagaattcg
gaggaggcagagagtggagtggaggtatactttcatgaggaggacagtgatactgaaatt
caacagcagccgaatcccagaaaaaccccggttcccaggctagaagtgcccctcggcttt
gcttgggatgtgagtttaaacactatctctcctgtgactcggaaacgtgaagacatcagc
tcagacagtgaggaagacgagcctgaggactccaaggccaaggtgacgaagagagagaag
gaagtgagcaagtggcagatggaaaaagagctgacgaaggttgagcagcagctgatggac
cccaatcgacacccacagtcagctgaggactttgaccgtctggtcctgagctcccccaac
agctccattctctggacacagtacatggcattccacctgcatgcaactgaaattgagaag
gcacggactgtggcagagagagccctgaaaaccatctccttcagagaggagcaggagaaa
ttgaatgtctgggttgcactgctaaatctggagaatctctatggcacagaagagtcactg
atgaaagtgtttgaacgtgctgttcagtatagtgagccgctgaaggtcttccagcagttg
gccagtatctacaccaaatctgagaagtacaagcaagcagacaacctgtacaacaccatg
ctgaaacggttccgccaagagagcactgtctggcttaattacgccaccttcctcctcaag
cagggaaagactgactgtaccagtgctttactgcagagggcactcaagtgtctgccccag
aaagaacatgttgacataattgccaagtttgcacagctggagtttcgtctcggggacaca
gaacgggcgaaggcaatgtttgagagcacgctgaacaattaccccaaacgcacagacctg
tggtcagtctatatcgacctgatggtgaaacatggtaaccaggacgaagtcaggcatctc
ttcgagagagtcatacacctgaagcttgcaccaaagaagatgaagttcttcttcaaaagg
tatcttgagtatgagaagaaacatgggaccgaggagagagtacagggcgtgaaggagaag
gcgctaaaatacgttgagtcaacgagcttgcctgtggacagctaa

DBGET integrated database retrieval system