Hemiscyllium ocellatum (epaulette shark): 132827116
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Entry
132827116 CDS
T09720
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132827116 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoc03021
]
132827116 (polr1a)
Enzymes [BR:
hoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132827116 (polr1a)
Transcription machinery [BR:
hoc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
132827116 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
132827116
NCBI-ProteinID:
XP_060699633
LinkDB
All DBs
Position
1:31219188..31383527
Genome browser
AA seq
1725 aa
AA seq
DB search
MGRESKSVALEKHSRSGSIREGRSSTFQAKLSVKAITNPYFLDNVGNPTANGLYDLALGP
ADSKEVCGTCAQDYNNCPGHIGHINLPLTVYNPLFFDKLYLLIRGSCLNCHFLTCPRAMM
YLLLNQLKVIDVGAIEAVYELEKVLNKVLEENSNATVDEIQTALNEHTLIILNNRANDKV
SRVKNVSDCKDKLIGDFWKNEMKSRKCPNCQAGKSVVRKEHNSKLIVTYPTTALKVKEND
DTAEAVEDSGGFDDLLLGKRGFLTPTTARDHMLALWKNDGFFLKYLFPGLRIHGNTKSSW
NLDMFFLDVLVVPPSRFRPINRLGDQMFTNGQTVNLQAVMKDVQVIHKLLALMAQEQIKT
VQSIYTEEISAIPVPEDKTPTRMDLAFLAGIPGQTLTDKLYSAWIHLQSHVNIVFDSDMD
KLITDKFPGVRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLT
YPQPVTPWNVQELRQAVLNGPNAHPGASMVINEDGSRTILSASNPTQREAIAKQLLTPST
GEQNLGMKIVCRHIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNAD
FDGDEMNAHFPQNELGRAEAYVIASTDEQYLVPKDGKPLAGLIQDHMVSGTSMTIRGRFF
TREQYMELVYRGLTDKKGRVKILQPAVLKPYPLWTGKQVVSTLLINIIPKDQMPLNLIGI
SKISGKAWIREAQRTVANFDPEWMSESKVVILEGELLCGVLDKAHYGSSAYGLVHCCQEL
YGGETSGKVLTCLARLFTAYLQLYRGFTLDVEDILLKPKANAKRQKIIEESTQCGAKAVR
KAFNLPDSASCDEVQDKWQNAHLSKDPKDMNVVDLKYKEEVNLYNNQINKVCMPLGLHRL
FPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMPSGKSLPCFQPYDFTPRSG
GFVTGRFLTGISPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR
DSDGSVIQFLYGEDGLDIPRTQFLQPGQFPFIAANYEGIKKSKHLEEVLGKLDSQAASKW
QKAIKKWKAKHPEAVSRLSAFLLYSQKKWNKIKNINRDGEWVNFRNPATQQLLETWKSLD
EKSKSKYLKKSARCPDPCFSVYQPDIYFGSVSENFSDTVDRYFTDQEGKEVSSYGKLDLP
LDRLKELLYLKWQRALCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL
REILMVASANIKTPMMSIPVLNSKKALKKVKKLKKQLTRVCLSEVLHKIEVKDSFQVQGT
LEKFRIYQITFHFLAYSLYRQEKCLTPNDLLHYMETRFFQLLLDGIKKKSAKLGSFKAVN
VRKATQKDLDQDSGESDGKQAEDDHDLQGEAEAPIIDAEAEEGDADATEAKRREKQEEEI
DYDSEGEEAGDNADEPEEKEDDDFPSSEQNEVTDQNLFECPYNFTKITKEKRRRKQAITE
TMEELRVNAVLNLHSAIEDYKYDVADSLWCEVNLKLPIMKVHFDLASLVMSIAQNAVVYE
TRGITRCLLNETTNRRGEKESVLNTEGVNFTEMFKYGDTLDLNCLYSNDIHAFANTYGIE
AALRVIEKEIKDVFSVYGIQVDPRHLSLVADYMCFDGSYKPFNRIGMQSSSSPLQQMTFE
TSYKFLKHATMLGSQDELKSPSACLVVGKVVRGGTGLFDLKQPLR
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagagtcaaaaagtgtggcactggaaaagcacagcaggtcaggcagcatccga
gaaggaagatcgtcaacgtttcaggcgaaactgagtgtaaaagcaatcactaatccttat
ttcctggataatgtgggcaatccaacagcgaatggtctttacgatttggcattaggtcca
gctgattctaaggaagtatgtggtacctgtgcgcaagattataataattgccctggacac
attggccatataaatctcccattaactgtctataatccgctattttttgataaactgtat
ctgttgataagaggctcctgtttgaattgccatttcctgacatgcccccgtgcaatgatg
tacctgctgctaaatcagttgaaagttatagatgtcggagccattgaagctgtttatgag
ttggagaaagtactgaataaggtgctggaggaaaattcaaatgcaactgtggatgaaatc
cagactgcactgaatgaacacactttaattattctgaacaatcgtgcgaatgacaaagtt
tcccgggtgaaaaatgtgagtgactgcaaagataaattgataggcgatttctggaaaaat
gagatgaaatcaagaaagtgtccaaactgccaagctggcaaatcagttgtgcggaaagaa
cacaacagcaaactaattgtgacatatcccacaactgctctgaaagtcaaagagaatgat
gatacagctgaggctgtggaagacagtggaggttttgatgacttgttgttaggaaaacga
ggatttctgactcccactactgcaagagaccacatgttggcactgtggaaaaatgatggt
ttcttcctgaaatatctatttcctggcttgagaatacatgggaatacaaaatctagctgg
aatcttgacatgttttttctggatgtacttgttgtacctccttccagatttcgtccaatc
aatcgactgggagaccagatgttcaccaatggtcaaacggttaatctgcaagctgtgatg
aaagatgttcaagtgatacacaagcttctggctctaatggcacaggagcaaatcaagaca
gtacaatccatttacacagaggagatatcagcaatacctgttccagaagacaagacacca
accaggatggaccttgcctttttagctggtattcctggacagacattgacagataaactc
tacagtgcctggatacaccttcaaagccatgtcaacattgtttttgacagtgacatggac
aagctgattacagacaagtttccgggtgtccgtcagatcctggagaagaaggacggtctc
ttccgtaaacacatgatgggaaaacgtgtggattatgcagctcgttcagtcatctgccct
gacatgtacatcaataccaatgagattggtattccaatggtttttgctacaaagctaacc
tatcctcagccagtgaccccatggaatgtgcaggagctgaggcaagcagtattaaatggg
ccgaatgcacatccaggggcttctatggtaattaatgaagatgggtctcgtactattctg
agtgcatcaaacccaacccagagagaagccattgccaaacaactgttaacaccaagcact
ggcgaacagaacttaggcatgaaaattgtgtgccggcatattaagaacggagatgttctg
ttgctgaaccgtcaacctactttgcacaggccgtccatccaggcccaccgggcccggatc
ctaccaggagagaaggtcctgcggcttcactatgcgaactgtaaagcctacaatgctgat
tttgatggtgatgaaatgaatgcacactttccacagaatgaacttggccgagcagaggct
tatgtaattgctagtactgacgaacagtatttggttcccaaggatgggaaacctttggct
ggtttaattcaggatcacatggtttctggcaccagcatgacaatccgtggccgtttcttc
acacgggaacagtacatggagcttgtttaccgaggccttacggataaaaagggccgggtg
aagattcttcaacctgctgtgcttaaaccctatccactttggacaggaaagcaggttgtt
tcaacgctgctgattaatataattcccaaggatcaaatgccattgaacttgatagggata
tcaaaaatcagtggcaaggcttggattagagaagctcagcgcacggtggctaactttgat
ccggagtggatgtctgagtccaaggttgtcattctggaaggagagttgctgtgtggtgtt
ctggacaaggcacattatggaagctcagcctatggcttggtccactgctgtcaggaacta
tatggtggtgagacaagtggaaaagtactgacctgtctggctcgcctctttactgcttac
ctccagctgtataggggatttactttagatgttgaagatattctattgaagcccaaggca
aatgcaaagaggcaaaaaatcattgaagagtcaactcagtgtggagccaaggctgtccga
aaagcttttaacttaccagactctgcctcgtgtgatgaagttcaggacaaatggcaaaat
gctcatctcagtaaagatccgaaggatatgaatgtggtggatttgaaatataaggaagaa
gtgaatttgtacaacaaccaaatcaacaaggtgtgtatgccactgggtcttcatagacta
tttcctgacaataacctgcaactcatggtgcagtctggtgctaaaggttcaactgttaat
acaatgcagatttcatgcctccttggtcagattgaactagaaggaaaacgtcctccgctg
atgccatctgggaaatcattgccctgtttccaaccttatgatttcactccacgttcaggc
ggctttgttactggccgattcctcactggtatcagccctccggaatttttttttcactgt
atggctggcagggaaggtctcgtggacacagctgtaaagaccagccgttctggatatctt
caaaggtgcattataaaacatttggaagggttggtggtgcaatatgacctgacagtacga
gatagcgatggcagtgttatacagttcttatacggtgaagatggtttagatattccaaga
acccagttccttcagccagggcagtttccctttattgctgctaactatgaggggattaaa
aagtcgaagcacttggaagaggttttaggcaaactggattcacaggctgcaagcaagtgg
caaaaagcaataaagaaatggaaggcaaagcacccagaagctgtctctcgtctaagtgca
ttcctgctctattcacagaagaagtggaataagatcaagaatataaaccgagatggagaa
tgggtaaatttcagaaatcctgcaactcaacaattgctcgagacttggaagtcgctggat
gaaaagagcaagtctaaatatttgaagaagtctgctcgctgtcctgacccttgtttttca
gtttatcagccagacatttattttggatccgtttcagaaaatttcagcgatactgtggat
agatacttcactgatcaggagggcaaagaagtcagtagctacggcaagttggacctccca
ctggatcgtttaaaggagctgttgtatctcaagtggcaacgagctctgtgtgagccagga
gaggccgtagggctccttgctgcacaaagtattggagagccatcaacacagatgacactg
aacactttccattttgctggccgaggagagatgaatgtcacattgggtatccccaggttg
cgtgaaattctcatggtggcgagtgctaacattaaaactccaatgatgagcattcctgtt
ttgaactcaaagaaagcattgaagaaggttaaaaaactgaaaaagcagctcacaagggtg
tgtttgtcagaggttttacacaaaattgaggtaaaagattccttccaggttcaaggcacg
ctggagaagttcagaatttaccaaataacatttcatttcctggcttacagtctgtaccga
caagagaaatgtttgacaccaaacgacttattgcactacatggaaacaaggtttttccaa
ctgctgcttgatggcatcaaaaagaaaagtgccaagctgggttcatttaaagctgtcaat
gtccggaaagccacacagaaggatcttgatcaggactctggagagagtgatgggaagcag
gcagaagatgaccatgaccttcaaggcgaagctgaggccccaatcattgatgcagaagca
gaagaaggagatgcagacgcaacagaagctaaaaggcgtgaaaaacaggaggaggagatt
gattatgacagtgaaggagaagaggctggagacaatgcagatgaaccagaagagaaagaa
gatgatgattttccatctagtgagcaaaatgaagtcacagaccaaaaccttttcgaatgt
ccctataatttcaccaagatcaccaaagaaaagaggagaaggaagcaagctatcacagag
accatggaggagctgagagtgaatgcagttttgaatttacattctgctattgaagattat
aaatatgatgtagctgacagtctttggtgtgaggttaacctgaagcttcccattatgaaa
gtgcactttgacctggcttcactagtgatgtcgatagcacaaaatgcagttgtctatgaa
actagaggaatcactcgttgtcttttaaatgaaacaaccaacagaagaggagagaaggaa
tcggttttgaacaccgagggagtaaatttcactgaaatgttcaaatatggtgatactttg
gatctcaattgtttatattcaaacgacatccatgcctttgccaacacatatggtattgaa
gctgctctaagagtcatagagaaagaaataaaagatgtcttttctgtatatggcattcaa
gtggatcctcgccatctttctcttgtggcagattacatgtgttttgatggttcatacaaa
ccatttaatcgaattggcatgcagtcaagctcctcgccccttcagcagatgacctttgaa
accagctataagttcttaaaacatgcaaccatgctcggttctcaggatgaattgaagtct
ccatcagcctgcctggtggtggggaaagtagtccgtggtggcactggcctttttgacctg
aagcagcctcttagatga
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integrated database retrieval system
