Hemiscyllium ocellatum (epaulette shark): 132827621
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Entry
132827621 CDS
T09720
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132827621 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
hoc03036
]
132827621 (tnrc6c1)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132827621 (tnrc6c1)
Chromosome and associated proteins [BR:
hoc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132827621 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
132827621
NCBI-ProteinID:
XP_060700162
LinkDB
All DBs
Position
25:complement(31770032..31971967)
Genome browser
AA seq
1986 aa
AA seq
DB search
MRDPEFKAAKEPQEEIKSEKEQETKGEDRLMEEKKKKKQEEKKKKEAAQKKAAEHKTKVP
EPTKTSQSQPQPANSCNSTSTTTITNSSGNNGKRASINCQQQALSRYPPREVPPRFRHQE
QKQLLKRGQPLPPGTVISNSLAQVTGQAAANPSQHSVQQASGGQQQLQHPSKGQTDLSHS
GLGTQYENSHWGQPPFRSEPNSIWDKVIIDGSDKEAWPSISGNETETASECTDTDSASNC
GSDNNSMATGSAPGNFNGQNKNCNNGGNGAVVQSSSNQSAIGCGANGGNGNSSRVWAVAP
GSAPGVGHCSAPSGNGKIDSIVSVNPNCWGTSTPTAGINLNLNPNANPAAWPVVGQEIQG
TVGGGSTSNICSPSNPIDQNYGNPNNGPAGTLNTWGNLLQPESTDTQTSTSQNVSFSIQP
QNLNTDGPNNTNPINSSPNPINAMQANGLPNVSVPGGWAMTVGMGTINPSHLQNLSGGGG
SSAVSQLSGRNGEGMNSPSCNSVWGVPHTNPTTTNSNSAFSQGNGDTVNSALSLSAKQTL
ANNSNNAVQKDVGNNAWDSGPPTSPRVLPWTRAGTIGGLHSGPSSIGAWGNTPSNRNTSN
GVNGEWGKLSNQHSSNEANGNGKGWEGLCVNSQTPALQQGNEQINSLAKPSDSGTTGSEG
SNESAGSQHEGSTSRSGGRHSSSRRKADKVMNEQQGLVQSVMSKPDHDPRVLCNSGWGQT
PVKQNISWEIQESPRSERKNDNGTEAWGSAAAQSSNSGARSDGSSISSTNTSLVSGWGNL
PPTVMSDNAGWGDKVSNSQGGWGDSANSTAAAAKSGHAWGGVSNQEEKPPSWADSQKPKS
QNWGEGQKTNQGWTSGGVGVVGSGGGDWTDTAAGPLSEAKKNGSSWENENSHTGPNWNET
TRSQASGWNSGTNSKPSSNTGWGEPSKSNAPQNWGNKLQDNNLSNWGGAASVKQSNSGWV
GGSLPTKQKDSEPTGWEEPSPPSIRRKIEIDDGTSAWGDPTNYKKTVNMWDRNNPVNQSS
SNAVAEQPPQPHQSSATQNRSPLLGPGWGETLSVPTKTDNSWGEPPLPSTTVDNGTSAWG
KPPNGSSTWADNTAESPGNFGRGNASAAVPTMCKPASKSMQEGWVSGGDEIGLTSSHHPN
WEEDDGEMGMWNNAASQESNSSCNSSGWGNANKKVHPKGMKASNKQEETWLMNRLIKQLT
DMGFPREPAEEALKSNNLNLDQAMGTLLEKKVEMDKRGMGMSDYNGIVSKPLGCRPPSIP
KESSMDRPTFFDKLTLSFSNQDGGLVEESPTSPFLPSPSLKLALSNSAHPNQALGAIASG
LGMQNLNSSRQSGNLGMFGNSGAAQARTMQQQQQPPVQPLNSSQPSLRAQVPQFLSPQVQ
AQLLQFAAKNMGLNPALLASPINPQHMTMLNQLYQLQLAYQRLLFQQQMLQAQRNVSGTI
RQQEQQVARTINNMQQQIQQHQRQLTQALLMKQQPPHPPLHPSAGKVTIDNLSHHPSPSL
SDLQTKEQQTSPNSFPAYSLAGLIPNMNVSNMELSGGISMKDSAQAQSRLRQWTHPNSIE
NLSSNSLPLDQSQSKHGAIPGGLNIGPTSKPSLEDSYSPYDLITSSESPASPPVPVSDSW
TRAKSPADKISNGSNINWPPEFRPGEPWKGLQNIDPETDPNVTPGSVPSGPSINTTIRDV
DRYLLRDRSGGSSPTSSQNATLPSSSAWSFSASGYTSSFSSSTSAPNTAAKLTDKSTWSS
GPIAQTQPSLSHELWKVPLGSKNTRPPPGLTNTKPSPSWGVSSLGLVSSWPSSYSSNSAW
STDSSGRNNSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKEEAAK
AQKSLHMCVLGNTTILAEFASDEEVNRFFAQGQTLTQTSSWQSNTGTNQSRLGSSTNSHG
LVRNDLGHWNTTSLSGKGANDLLWSGVPQYSSSLWGPPNSDDTRVIGSPTPINTLLPGDL
LSGESM
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atgagagaccccgagtttaaagctgccaaagagcctcaggaagaaattaaaagtgagaaa
gaacaagaaactaaaggagaggaccgtttgatggaagaaaagaaaaagaaaaagcaagaa
gagaagaaaaagaaggaagctgctcaaaaaaaggctgctgaacataaaaccaaagtgcca
gaacctaccaagactagtcaaagccagccacagcctgccaattcctgcaacagcacttcc
acgaccaccattactaacagtagtggaaacaatggcaagcgagcttctatcaattgtcag
caacaggccttgtcccgctacccacctcgcgaagtgccgccacgcttccggcatcaagaa
cagaaacagctattgaagaggggtcagccactaccacctgggactgtcatcagcaatagt
ttagcacaagttacagggcaagcggcagcaaatccttctcagcacagtgttcaacaggca
tcaggtggacaacagcaactccagcatcctagcaaaggacagacagatcttagccacagt
ggtctgggaacgcaatatgaaaattcccactggggacagcccccctttcggagtgaacca
aacagcatctgggataaagtgataatagacggaagtgacaaagaggcttggccttccatt
tctggaaacgagactgaaactgcctcagaatgcacagacactgactctgcctcaaattgt
ggctcagataataatagcatggctacagggagtgcaccaggcaacttcaatggacaaaac
aaaaattgcaataatggtggcaatggagcagttgtccaaagcagttcaaaccagagtgcc
attggatgcggtgcaaatggtggaaatggaaattcatccagggtgtgggctgttgcccca
gggtctgcccctggtgtagggcactgctctgctcccagtggaaatggaaagattgatagt
atcgtaagtgtaaatccaaactgttggggcacttctacacctactgctggtattaatctg
aatcttaatcctaatgccaatccagctgcttggcctgtagttggccaggaaattcaagga
actgttggaggaggaagcacttcaaatatttgtagtccaagtaatcccattgatcagaat
tatggtaaccctaataatggtccagcaggtacattgaatacctggggaaatttgctgcag
ccagagagcacagatacacaaacgtccacttcacagaatgtgtctttcagcatacaacct
cagaaccttaacactgatggaccaaataacactaaccccataaactcttcaccaaatcct
atcaatgcaatgcaagcaaatggattgcctaacgtttctgtaccaggaggctgggcaatg
accgtaggcatgggtacaataaacccatctcatcttcaaaacctttctggtggtggtggg
tcatctgcagtttctcaactcagcgggcgcaatggcgaaggaatgaatagtccttcatgc
aactcagtgtggggagtgccacatactaatcctacaaccaccaacagtaactctgcattt
agtcaggggaatggagacactgtgaattctgcattaagtttaagtgctaaacagacatta
gcaaacaattccaataacgctgtgcaaaaggatgttggaaacaatgcttgggactctggt
cccccaaccagtcctagagtactgccatggacaagggctggtaccattgggggcttgcac
tctggtcccagtagcattggagcttggggtaatacaccatctaataggaacactagcaat
ggtgtaaatggagaatggggcaaactctctaaccagcattccagtaatgaagcaaatgga
aatgggaaagggtgggagggtctttgtgttaacagccaaactcctgctttgcagcaaggt
aatgaacaaattaactctttggccaaaccttctgattcaggtaccactggtagtgaggga
agtaatgaaagtgctggcagccaacatgaaggaagcaccagcagaagtggaggaaggcat
agtagtagccgacgaaaggctgataaagtgatgaatgaacagcaagggctggtccagagt
gttatgtcaaagccagatcatgaccctagagtcttgtgtaattctggatggggacagaca
ccagtaaagcaaaatatttcctgggaaattcaagaatcccctaggtctgagcgaaaaaat
gacaatggaactgaggcctggggttctgctgctgcccagtcttcaaactcaggggcgaga
agtgatgggtccagcataagcagtacgaatacctctttagtatctggttggggaaatctt
ccaccaacagttatgtctgataacgcaggttggggagacaaagtgtctaatagccagggg
ggatggggagattctgctaattctactgctgctgctgccaaaagtggccatgcctggggt
ggggtttctaatcaggaggagaaaccaccatcctgggcagactctcagaaacccaagtct
caaaattggggtgaaggacagaaaaccaatcaaggatggacatcaggaggagtgggagta
gtagggagtggtggaggagattggactgatactgctgcaggacctttaagtgaggcaaaa
aaaaatggatctagttgggagaatgaaaacagccatactggacccaattggaatgagaca
accagatcacaggctagtggatggaatagtggtaccaacagcaaaccaagttcaaataca
ggctggggagagccttcaaaatcaaatgcaccacagaactggggaaataaacttcaggat
aataatcttagcaactggggaggagctgcttctgttaaacagtctaattcgggttgggtt
ggtggatctttgcctacaaaacagaaggacagcgaacccactggctgggaagaaccttcc
ccaccatctattcgccgcaaaatagagattgatgatggtacctctgcttggggagaccca
accaattataagaagactgtaaacatgtgggatagaaacaatcctgtgaatcaaagtagt
agcaacgctgtggctgaacaaccacctcagccccatcagtcaagtgccacgcaaaaccgg
tcccccctacttggtccaggctggggagaaacactcagtgttcctacaaagactgataac
tcttggggtgagccgccacttccatctaccacggtcgataatggaacttcagcatggggc
aaacctcccaatggcagctcaacttgggcagacaatactgcagagtcaccggggaatttt
ggtagagggaatgcttcagctgctgtcccgacaatgtgcaaaccagcctcaaaatctatg
caagaaggttgggtcagcggtggagatgaaatcggcctgactagtagccatcatcctaac
tgggaagaggacgatggggagatgggaatgtggaataacgcggcttctcaggagagcaac
tcttcctgcaattcatcaggctgggggaatgccaacaagaaagtgcatccaaagggcatg
aaagcatcaaataaacaagaggagacttggcttatgaaccgcctgattaaacagttgact
gatatgggcttccctagggaaccagcagaagaggctctgaaaagtaataacctgaattta
gatcaagctatgggtacactgttagaaaaaaaagtggagatggacaaacgtggaatggga
atgtcagattacaatggaatagtttctaaaccacttggctgccgaccaccttctatcccc
aaagagtcttccatggatcggcccaccttttttgacaagctcaccctatccttctctaat
caggatggcggcctagtggaagagtcccctacttcaccatttttgccttcaccaagcctg
aagcttgccctttcaaatagtgcacaccctaatcaggcccttggtgccattgcctcgggg
ctgggcatgcaaaacttgaattcttctagacagagtggcaatctaggtatgtttggcaat
agtggagcagcacaagccaggaccatgcagcagcaacagcagccgccagtgcaacctctt
aactcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcaggttcaa
gcacagctcttgcagtttgcagcaaaaaacatgggtctcaaccctgcactattagcctcg
ccaattaatcctcaacatatgactatgttaaaccaactctatcagctgcagctggcctac
cagcgtttactcttccagcagcagatgttacaggcccaacgtaatgtttctggaaccatt
cgacaacaagagcagcaagttgcacgtacaatcaacaacatgcagcagcagatccaacaa
caccagcggcagctgacccaggccttgcttatgaaacagcaacctccacatccaccattg
cacccatctgcaggcaaagtaaccattgataatctgagtcatcacccatctcccagcctt
tcagacctgcagaccaaagagcagcaaacatcacccaattctttccctgcatattccttg
gctggattgatcccgaatatgaatgtaagcaacatggagctaagtggtggtatatccatg
aaggattcagctcaagctcaatctcgattgaggcagtggacccacccaaactcgatagaa
aatttaagcagtaattctttaccgctggaccagagccagagcaagcatggtgctatccct
ggaggtctcaatattggtccaacaagcaagccctcccttgaggactcctacagtccatat
gatctgataaccagcagtgagtcaccagccagtcctccggtaccagtcagtgatagctgg
acacgtgccaaatcccctgccgataagatctcaaatggctccaacattaactggccacca
gagtttcgtcctggagagccatggaaaggactacagaatatcgaccctgagactgatcct
aatgttacacctggaagtgtccccagtggaccttccattaatactactatccgggatgtg
gatcgttacctgctcagggacaggagtggagggtcatccccaacatcatctcagaacgcc
acgctgccttcatctagtgcctggtccttcagtgcctctggctatactagctctttcagc
agctctacatctgcacctaatactgcagctaaactgacagataaatccacttggtcatct
ggacccattgctcaaactcaaccatctctatcgcatgaattatggaaagtgccgctagga
tccaaaaacactaggccaccaccaggcctgacaaacaccaagccatcaccatcctggggt
gtcagttcactcggacttgtctcaagctggccaagctcttattcctccaattctgcttgg
agtactgacagctctggaagaaacaatagctggctggttctccgaaacctcacaccccag
atcgatggttcgactttgcggactttatgcatgcaacatggtccattaataacattccat
ctgaacctgacccaaggaaatgctgtggttcgctacagttccaaggaagaagcagctaag
gcccagaaatctctgcacatgtgcgttctgggaaacactaccatcctcgctgaatttgct
agtgacgaggaagttaaccgtttctttgcacaaggtcaaacactgacacagacctcgagc
tggcagtctaacacaggaaccaatcagagccgacttgggtcaagcaccaactctcacgga
ttggtccgcaatgatctgggtcactggaatactacaagcctgagtgggaaaggagcaaat
gaccttctatggagtggtgtcccccaatactccagcagcctctgggggcctccaaacagt
gatgataccagagtaattggcagccctacgcctataaacaccttgctccctggtgacctt
ctcagtggagaatccatgtag
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integrated database retrieval system
