Hemiscyllium ocellatum (epaulette shark): 132827922
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Entry
132827922 CDS
T09720
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132827922 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hoc03041
]
132827922 (ddx5)
03009 Ribosome biogenesis [BR:
hoc03009
]
132827922 (ddx5)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132827922 (ddx5)
Spliceosome [BR:
hoc03041
]
Complex A
U1 snRNP components
U1 related factors
132827922 (ddx5)
Complex B
132827922 (ddx5)
Ribosome biogenesis [BR:
hoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
132827922 (ddx5)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
BNIP2
Motif
Other DBs
NCBI-GeneID:
132827922
NCBI-ProteinID:
XP_060700742
LinkDB
All DBs
Position
25:9520491..9531606
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AA seq
653 aa
AA seq
DB search
MPGYDRGDRSRERGGFGSGGPRFGGSRNAPPPGRKFGQPGEKLRKRKWDLDELPKFEKNF
YVEHVDVMNRPVQEIEQYRRSKEITVKGLGCPKPVFNFVEASFPTYVLDVLMQQNFTEPT
AIQAQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQHVAHDYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKEYV
QINIGALELSANHNILQIIDVCQEVEKDDKLLRLMEEIMSEKENKTIIFVETKRRCDELT
RRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDY
PNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQANDLISVLREANQAINPKLIQMVEDR
GSGRSRGRGGYKDDRRDDRRDRFSSSNRSGGYNGFRNRESMDRVYGPGGRENGFSTQNYT
SAGQNSFGSGKFSSTNSFGSISRFGNSSSYPGSVNQGAGSYGSQSQNGFKAVAGKVQQFG
GNHSGPNAMQSNGIGQQPSVGAQYQYAPLPLMGMGFQAQTGYPMPLAYAGLQK
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcctggttacgatagaggtgatcgcagtcgggagcgtggcggattcggttcgggtgga
cctcgcttcggcggtagcaggaacgcgcctcctcccggtaggaaattcgggcagccgggg
gagaagctgaggaaaagaaaatgggacctggacgagctgcccaaattcgagaagaacttc
tacgtcgagcacgtagatgtgatgaaccgacctgtgcaagaaattgaacaatatagaaga
agcaaagaaatcacagtaaaaggacttggttgccctaaaccagttttcaactttgttgaa
gcaagttttccaacctatgttttggatgttctcatgcagcagaatttcacagaaccaact
gctattcaagctcaaggttggcctgttgcacttagtggcaaagatatggttggaattgcc
cagactggatctggtaaaacattagcttatttgctgcctgccattgtccacataaatcat
caacctttcctggaacgtggggatggtcccatatgtttggtcctggcgccaaccagagaa
ctagctcaacaagtacagcatgtggcacatgattatggaagagcatcccgtctaaaatca
acatgtatttatggaggtgcaccaaagggtccgcagattcgggaccttgaacgaggtgtg
gaaatctgtattgcaacacctggtagattgattgactttctggaagctggtaaaacaaat
ctaaggagatgtacatatctggtacttgatgaggctgatcgcatgcttgacatgggtttt
gaaccacagatcaggaaaattgttgagcaaatcaggcctgacagacagaccttgatgtgg
agtgcaacttggcccaaagaagttcgacagttggctgaagatttcttgaaggaatatgtt
cagattaatatcggcgctttagaacttagtgctaatcacaacatcctgcagattattgat
gtgtgccaagaagttgagaaagatgataagctgctacggttgatggaggagataatgagt
gaaaaagaaaacaaaactataatttttgtagagaccaaacggagatgtgatgagcttaca
cggcgaatgaggagagatggatggccagcaatgtgcattcatggtgacaagagtcagcca
gagcgtgactgggttctaaatgagtttcggtcaggcaaagcgccaatccttattgccaca
gatgttgcatctagaggtttagatgttgaagatgtgaaatttgtcatcaattatgactac
cctaactcctctgaagactatattcaccgcattgggcgaactgcccgcagttccaaaact
ggcaccgcttacacgttctttactcctggcaacataaagcaagcaaatgaccttatctct
gtgcttcgtgaagcaaatcaggctatcaacccaaagctaattcagatggtcgaagacaga
ggatcaggtcgttccagaggtaggggtggatataaagatgatcgccgtgatgacagaaga
gacagattctctagttccaacaggagtgggggttataatggttttagaaaccgggagagc
atggacagggtatatggacctggaggcagggaaaatggttttagcactcaaaattatacc
tcagctggacaaaattcctttggttctggaaaatttagctcaacgaacagctttggaagt
atatctcggtttggaaactcctccagttatccaggatctgtgaaccagggggcaggttca
tatggcagtcaaagtcaaaatggtttcaaggctgttgctggcaaagtccagcaatttgga
gggaatcattctggtccaaatgccatgcagagcaatggcattggtcaacagccatctgtg
ggtgctcagtatcagtatgcacccctgcctttgatgggaatgggtttccaggcgcagact
ggttaccctatgcctcttgcttatgcagggctgcaaaaataa
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