Hemiscyllium ocellatum (epaulette shark): 132827964
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Entry
132827964 CDS
T09720
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132827964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoc03021
]
132827964
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132827964
Transcription machinery [BR:
hoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132827964
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132827964
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_12
zf-CCCH_3
zf-CCCH_2
zf-CCCH_4
zf-CCCH_RBM22
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
132827964
NCBI-ProteinID:
XP_060700801
LinkDB
All DBs
Position
25:complement(23842568..23857787)
Genome browser
AA seq
201 aa
AA seq
DB search
MQELVAGLQMMRFDFEVVLEQQRGIMDLPFSGMDRSSSAVCELFIKGKCLKEQMCPFRHT
CGDKNVVCKHWLRSLCKKGDQCEFLHEYDETKMPRCYFYSKYGECNKQECPFLHINSRIQ
IPDCPWYDRGFCKYGPLCKNKHTRKIICENYLAGYCPEGTACKLSHAGKGTPPEPKQRQM
SNSDNYSNCVTGSETQDCQTI
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagttggtagctggtttacagatgatgagatttgattttgaagttgttctggag
caacagagaggaattatggatttgccattttctggcatggatagatctagttcagctgtt
tgtgagcttttcattaaaggtaaatgcttaaaagaacaaatgtgcccatttcgacacacg
tgtggtgacaagaatgttgtatgcaaacactggctccgaagcctgtgtaaaaaaggagac
cagtgtgagtttttgcatgagtatgatgagaccaagatgccacgatgctacttctattca
aaatatggtgaatgcaataagcaagagtgtcctttcctacacatcaattcgcggatacaa
attccagactgcccctggtatgaccgagggttctgtaaatatggcccactgtgcaaaaac
aaacacaccaggaagataatctgtgagaattatctggctggttactgccctgaaggaaca
gcatgtaaactttcacatgcagggaaagggacaccacctgaaccaaagcaacgacaaatg
tcaaactctgacaactacagcaactgtgtaactggatctgaaacccaggactgtcaaaca
atctaa
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