Hemiscyllium ocellatum (epaulette shark): 132828973
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Entry
132828973 CDS
T09720
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03018
RNA degradation
hoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132828973 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
132828973 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132828973 (lsm4)
03041 Spliceosome [BR:
hoc03041
]
132828973 (lsm4)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132828973 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
132828973 (lsm4)
Spliceosome [BR:
hoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
132828973 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
132828973
NCBI-ProteinID:
XP_060702195
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All DBs
Position
28:1760712..1787935
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AA seq
142 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWKMPECY
IRGSTIKYLRIPDEIIDMVKEEVLSKGRGRGIQQQKQQQQQKGRGAGGAAGRGVFGGRGR
GVAGVNRGQEKKPGKLSGMKKP
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccctctcattacttaagacagcgcagaatcacccaatgctggtggagctgaag
aacggagaaacatacaatggtcatctggtcagctgtgacaactggatgaatatcaacctg
cgagaggtcatttgtacatctagggacggggataagttctggaagatgccggaatgttac
attcgtggcagcaccatcaagtatctccgtatcccagatgaaatcatcgacatggtgaaa
gaggaggtactgtcgaagggccgaggacgtggcattcagcaacagaagcaacagcaacaa
caaaaaggccggggtgcaggtggcgcagctggcagaggtgtgtttggtgggcgtggacgt
ggagtggccggagtaaaccgaggacaagagaagaaaccaggaaagttatcaggaatgaag
aaaccatga
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