| Entry |
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| Symbol |
upf1
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| Name |
(RefSeq) regulator of nonsense transcripts 1 isoform X1
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| KO |
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| Organism |
hoc Hemiscyllium ocellatum (epaulette shark)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:hoc00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132829155 (upf1)
03015 mRNA surveillance pathway
132829155 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:hoc03019]
132829155 (upf1)
Enzymes [BR:hoc01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132829155 (upf1)
5.6.2.5 RNA 5'-3' helicase
132829155 (upf1)
Messenger RNA biogenesis [BR:hoc03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132829155 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132829155 (upf1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
28:955474..1030625
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| AA seq |
1103 aa
MSVDAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQGPIEGQVNG
PDGVLQNGAIDDAVAKASQLLPELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDSILYYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSGQAGRPSNMYFQTHDQIGMIGASPSH
VAAMNIPIPFNLMMPPMPPPGYFGQANGPAAGRGIAKGKVGRGARQRNRGVGNQLNSQSN
LPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY |
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| NT seq |
3312 nt +upstreamnt +downstreamnt
atgagtgtggacgcgtacgggccgagctcacagaccctcaccttcctggacacggaggag
gccgagctgctgggggccgatacgcagggctccgagttcgagttcaccgacttcacttta
ccgtcacagacacaaacacagggccagagccaagggcccatcgaaggccaggtgaatgga
ccagatggagttctccagaatggagcaattgatgatgctgttgccaaagcaagtcagtta
ttaccagaactgaactttgaagaggatgaagaggatacatactacacaaaggatcttcct
ttgcatgcctgcagttattgcggaattcatgatccagcctgtgttgtttactgcaacacc
agcaagaagtggttctgtaatggccgtggaaacacctctggcagccatattgtaaatcat
ctggtgagagccaagtgcaaggaagtgactcttcacaaagatgggccattgggagagact
gtcctggagtgttataattgtggttgcaggaatgtgttcctcctgggtttcatccctgct
aaggctgactctgtggtggtgctcctatgcagacagccatgtgccagtcagagcagcctg
aaagatatcaactgggatagttcacagtggcaaccactaatccaggaccgttgctttctg
tcttggttggtaaagataccttcagagcaggaacaattgcgagcccgtcagatcactgca
cagcagatcaacaaattggaggagctctggaaggataatccttctgctaccctcgaagac
ttggagaagcctggagtggatgaagagcctcagcatgtactacttcgttacgaggatgct
tatcaataccagaacatcttcggtccactggtcaagctggaggctgactatgacaaaaag
ctaaaggaatcgcagactcaggacaatatcactgtaagatgggatctgggtctgaacaag
aaaaggattgcatacttcaccttgcctaagacggactctgacatgcgcctgatgcaaggt
gacgaaatctgtctgcgttacaagggtgacctggcacctctttggaaagggatcggccac
gtgatcaaagtcccggacagtatcctttattatggggatgagatcgctattgaattgcgc
agcagtgttggagctccagttgaagtaacccacaacttccaggtggactttgtctggaaa
tcaacttcatttgacagaatgcagagtgcattaaaaaccttcgcagtggatgagacctct
gtgtctggctacatttaccacaaattgcttggccatgaggtggaggatgtgattattaaa
tgccagctgcccaaacgcttcactgcccatggtttgcctgaccttaatcactctcaggtt
tatgctgtgaagactgttctgcagcgccccctcagtctaatccaaggacctccaggcact
gggaaaactgtcacctctgctacgatagtttatcatctggccaggcaaggcaatggtcct
gtcctggtatgtgctccgagtaacattgcagtggaccagttgactgagaagattcatcat
acaggtctgaaggtggtacgtctctgtgccaagagtcgtgaggccattgattcaccagtc
tctttcctggctctgcataatcaaatccgtaacatggatagtatgcctgaattgcaaaaa
ttgcagcagttaaaggatgagactggcgagttgtcatctgcagatgagaagcgctaccgt
gcactcaaaaggacagctgagcgggaactgctgatgaatgctgatgttatttgctgtacc
tgcgttggagctggtgacccacgcctggctaagatgcagttccgttccattctcattgat
gagagcacacaggccacagagcctgaatgtatggtccctgtagtgctgggagcaaagcag
ctgatcctggtgggtgaccattgccagcttggtccggtggttatgtgtaagaaagctgct
aaagctggtctgtctcagtcgctttttgagcgtctggttgttctcgggatccgaccaatt
cgtctgcaggttcaatacaggatgcatccagctctcagtgcctttccatccaacatcttc
tatgagggctcactgcaaaatggtgtcacagcagcggatcgcatcaagaaaggctttgac
ttccagtggccacagccagacaagccaatgttcttctatgtaacccagggccaggaggaa
attgctagctcggggacctcctacctcaataggactgaggcagccaatgtcgagaagatc
accaccaaactgctgaaggcaggtgccaagccagatcaaatcggcatcatcacaccatac
gaggggcagcgatcctacctggtgcagtacatgcagttcagtggttcccttcacaccaaa
ctctatcaggaggtagaaattgccagtgttgatgcgttccaaggccgagagaaggacttc
atcatcctatcgtgtgtccgagccaacgagcatcaaggcattggatttctcaatgatccc
cggcgattgaatgtggccctcacaagagcgagatatggtgtgattattgtgggaaatcca
aaggctttatccaaacagccactgtggaatcacctgctgaattattacaaagaacagaaa
gtgctggtggagggaccactgaataatctccgcgagagtctaatgcagttcagcaaacca
cggaaacttgtcaacaccatcaatccgggagcccggttcatgacgacagcaatgtatgat
gctcgagaagctattatcccaggctctgtatatgacaggagtggtcaggcaggtcgtcca
tccaacatgtactttcaaacccatgatcagattgggatgattggagccagccccagtcat
gttgctgcaatgaatattcccattccctttaatctgatgatgcccccaatgccgcctcct
ggatactttggacaagcaaatggaccagcagcaggtcgtggaattgcaaaaggaaaagtg
ggtcgtggggctcgccagcggaaccgtggcgtggggaaccagctgaacagccagtcaaat
ctgccaaacagccaagccagtcaggatgtggtctctcagccattctctcaagggcctctg
acccagggctacatctcaatgagccagccttcacaaatgagccagcctggcctttctcag
ccagaactctctcaggatagttacctgggcgatgagttcaagtcgcagattgacgtggcc
ttgtcgcaggattccacttaccagggcgaacgtgcatatcaacatggggtgactgggctg
tcacagtactag |
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