Hemiscyllium ocellatum (epaulette shark): 132829726
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Entry
132829726 CDS
T09720
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132829726 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132829726 (ddx6)
03036 Chromosome and associated proteins [BR:
hoc03036
]
132829726 (ddx6)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132829726 (ddx6)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132829726 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
132829726 (ddx6)
Chromosome and associated proteins [BR:
hoc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132829726 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
132829726
NCBI-ProteinID:
XP_060703091
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All DBs
Position
29:54503308..54539285
Genome browser
AA seq
486 aa
AA seq
DB search
MTTARTENPVIMGLSTQNGQLRGPLKPSAGPGGMPSSQVSQTNQQLQQLKNASTLNGTQQ
QAHTTSSTIKPGDDWKKSLKLPPKDRRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWE
KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKRDCIQAMVIVPTRELA
LQVSQICIQVSKHMGGVKVMATTGGTNLRDDILRLDETVHVVIATPGRILDLIKKGLAKV
DNIQMIVLDEADKLLSQDFVQMMEDIISTLPRTRQILLYSATFPLSVQKFMNSHLQKPYE
INLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQL
GYSCFYIHAKMRQEHRNRVFHDFRNGMCRNLVCTDLFTRGIDIQAVNVVINFDFPKIAET
YLHRIGRSGRFGHLGLAINLITYDDRFNLKAIEEQLGTEIKPIPGSIDKSLYVAEYHSEP
DGEDKQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagccaggacggaaaatcccgttattatgggtttgtctactcagaacgggcag
ttgagaggcccactgaaacccagtgcaggcccaggagggatgccgtcgtcacaagtttct
cagaccaatcaacagctacagcagctgaaaaatgccagcacacttaatggcactcagcag
caagcacatacaaccagcagtactattaaaccaggtgatgactggaagaaaagtttaaaa
ttacctccaaaagacaggaggatgaaaacttcggatgtaacagccacgaaaggaaatgaa
tttgaagattactgcttgaagcgcgagttgctaatgggcattttcgaaatgggctgggag
aaaccgtcaccaatccaggaggagagtattcctattgcgttgtctggcagagatatattg
gcccgagccaaaaacggaacaggtaaaagtggagcctacctcattccattacttgaacgg
ctggacctgaaaagagattgtattcaagctatggtaatcgtgcctacccgggagttggca
ctgcaagtcagtcaaatctgtatccaagtcagcaagcatatgggtggtgtgaaagtgatg
gctaccacaggaggaaccaatctccgggatgacatcctgaggctcgatgagacagtccac
gtggtgattgcaacccctggaagaatccttgatttgattaaaaaaggcttggctaaagtg
gacaacatacagatgattgtattagatgaggcagacaaattgctgtcacaggactttgtg
cagatgatggaggacataatctctacattaccaagaaccagacagatcttgctttactct
gccacgttcccactcagtgtacagaagtttatgaattcacatttgcagaaaccatatgaa
attaacctgatggaagagctgacactgaaaggagtaacccagtactatgcctatgttaca
gaacggcagaaagtgcactgtctcaacaccctcttctctaggcttcagattaaccagtca
attatattctgcaactcctcccaacgagtggagctgctggctaagaaaatttcccagttg
ggttactcctgtttttacattcatgctaaaatgaggcaggagcatcgtaaccgtgtgttc
catgattttagaaatggaatgtgccgcaatttggtttgcactgatctgttcactcgtggt
attgatatccaagctgtgaatgttgtaataaactttgatttcccaaagattgcagagacc
tatctacatcgaattggcagatcaggacggtttggccacctggggctggcaatcaacctc
atcacgtacgatgatcgctttaatctaaaggctattgaggagcaactcggaacagagatc
aagcccatccctgggagtattgacaagagtttgtacgttgcagagtaccacagtgagcca
gatggggaggacaaacagtaa
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