Hemiscyllium ocellatum (epaulette shark): 132830363
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Entry
132830363 CDS
T09720
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132830363 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hoc04131
]
132830363 (scarf1)
Membrane trafficking [BR:
hoc04131
]
Endocytosis
Phagocytosis
Scavenger receptors
132830363 (scarf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
SPAR
Motif
Other DBs
NCBI-GeneID:
132830363
NCBI-ProteinID:
XP_060703993
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Position
31:complement(4078063..4117912)
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AA seq
880 aa
AA seq
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MATGPLLTLVSLYALVWTSHGQQLHPNGTNVCSSARDPPSLSCCPGWRQQGNECSIGTAE
FLQHTFLFDYSAICDGPHSCSPQEICIRPGVCRCPHGFFGAKCVTRCPDQFWGPDCRNEC
PCHPNGRCEARTGRCLCYRGYWGPRCSRKCDCLHGQCDSSTGSCQCEAGWWGHDCSRLCR
CETGKSVCDPQTGRCLCSPGYWGTRCNLLCYCHRSPCGQLTGVCECTAGWWGPLCERRCA
CLHGFCNSTNGHCVCQPGYHGTTCNQPCQTGLYGENCRKRCGHCKDAEQCSPSDGSCPAC
LQGWTGSQCERPCPPGAHGENCTEHCPHCRHGEPCNAITGHCRSCNPGWIGPRCDTRCVS
GTFGLGCQSICPDCNHGNCHHIAGECVCHEGYTGARCNLTCLSGFYGLNCSTSCHCLGAA
CDPVTGDCPFSQGGVVIAVVVVSLLILLCILCCCCCGNDKNDPKDRTLEEEHGPITRMKH
HVRGVLLNLGSGILCFSFGNQKLPKVTVSHHDADVSFNCSFIDSPSAGWESVSFSSFGTD
EGEPVYCVPPQEGSLLLTPEAGFQELSSRCNYFPVEQSEPNSEDTVQPLNIPRTSSIVKA
HRPSVSFAEGTKFGPEWRRGSMPESRVIPAANAQRKRKLSWTLSKLSPIESVPGQSECQP
YQCIDVPGVYPDGRAPSHHSLTSPGARAGEHTAPSPMAPRDPQGLEPRGSPVTPAGTRIG
GSSQKAPTREPQRSSRIWASTADGIGVGTVQAMLRRFGSFQKQRSAPQEELGPRARGQNV
SKLQRTLEKKLRSCASAGEAASPSVHCSPGSQQSPAGSTSTLPRKALIPTTPILHKLVAN
VTEGTQGRLDMLHPSSQSEPSPGLEPEIPGGQQEPRQNAL
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggctacgggacccctactcaccctggttagtctttacgctctggtctggacctctcac
ggtcagcaacttcatccgaatggaactaacgtttgttcatcagcaagagatcctccatca
ctgagctgctgtccaggctggaggcagcagggcaatgagtgctccatcggcactgctgag
tttctccagcacactttcctgtttgattactcagcgatctgcgacgggccacattcctgc
agcccgcaagagatctgcatccggcctggagtctgccgctgtccccacggattcttcgga
gccaagtgcgtgaccaggtgtccggatcagttttggggtccggactgtcggaatgagtgt
ccgtgccacccgaacgggaggtgtgaagcgaggacagggaggtgcctgtgttaccgcggt
tactggggcccacggtgcagcaggaagtgtgactgtctccatggccagtgtgatagcagt
accgggagctgccagtgtgaggcaggctggtggggacatgactgcagcagactgtgtcgc
tgtgagacagggaagtcagtgtgtgacccacagacagggaggtgtctctgctcccctggg
tactggggcacacggtgtaacctgctgtgttactgtcaccgctcgccatgtggccagcta
accggggtgtgtgagtgtaccgccggctggtgggggcctctgtgtgaacgccgctgtgcc
tgtctacatggattctgtaactccaccaatgggcactgcgtgtgccagcccggctatcac
ggcacaacctgcaaccagccctgccagactggcctctacggagagaactgccgcaagagg
tgcggtcactgtaaggatgcagagcagtgctcccccagcgatggttcctgcccagcctgt
ttgcagggatggaccgggagtcagtgtgagcggccgtgccccccaggagcacacggggaa
aactgtacagagcactgtccccactgcaggcatggggaaccctgcaacgccatcactggt
cactgccgaagctgcaaccctggctggattggccccaggtgtgacacccgctgtgtgtct
gggacgtttggtcttggttgtcaatccatctgtcctgactgtaaccatggaaactgtcac
catatcgcaggggagtgtgtgtgccatgagggatatacaggagccagatgtaacctcacg
tgtctgagtggattttatggtctgaattgttcgacttcctgtcactgtcttggagcggcc
tgtgaccctgtgactggagactgtcctttcagtcagggcggcgttgtgatcgctgttgtt
gtggtgtcgctactcatcctgctctgcatcttgtgctgctgttgttgtggaaacgacaag
aacgatcccaaggacaggacactggaggaggaacatggtccgattacacggatgaaacac
cacgtccggggagttctgctcaatcttggctccggaatactgtgcttctcgttcggaaat
cagaaactgcccaaagtgaccgtttcccaccatgacgctgatgtcagtttcaactgcagt
ttcattgactctccctcagctggatgggagtctgtctcattctcctccttcggcactgat
gagggggaacctgtctactgtgtccctcctcaggaaggaagcttgttgctgactcctgaa
gccggttttcaggaattgagttcccgctgtaactatttcccggtggagcagtcggagccg
aacagtgaggacactgtgcagccgctgaacattcctcggacctccagcattgtgaaagct
caccggccctctgtctcgtttgctgagggcaccaaattcgggcctgagtggaggcggggc
tcgatgcccgagagcagggtcatccctgcggccaatgcccagcggaaaaggaagctgtcc
tggactctcagtaagttatcgcccattgagtcggtaccagggcagtctgaatgccagcct
taccagtgtatcgatgtgcccggtgtctaccctgacggcagagctccatcccaccacagt
ctgacctctcccggggcacgtgctggggagcacacagctccctcccccatggcccccaga
gacccccagggtctggagccgaggggctccccggtcacaccggcagggaccaggattggt
ggcagtagccagaaggcgccgacacgggaacctcagcgctcctccaggatctgggccagc
accgcagatggaatcggagtcggcacggtccaggcaatgctgaggaggttcggaagtttc
cagaagcaacggtcagctccccaggaggagctgggtcctcgcgcccggggacagaacgtc
tccaaactgcagcgcacgctggagaagaagctgaggtcgtgtgcgtcagcgggtgaggct
gcctctcccagtgtgcactgttccccagggtcccagcagagcccagcaggcagtaccagc
accctgcccaggaaggccctgatcccaaccacacccatcctccacaaactggtggccaat
gtcacagagggcacacaggggcggctggacatgctgcacccctccagccaatccgaaccc
tctcccgggctggagcccgagatcccgggcgggcagcaggaaccccggcagaatgctctg
tga
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