Hemiscyllium ocellatum (epaulette shark): 132830820
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Entry
132830820 CDS
T09720
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132830820 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hoc03041
]
132830820 (ddx42)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132830820 (ddx42)
Spliceosome [BR:
hoc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132830820 (ddx42)
Complex B
132830820 (ddx42)
Complex C
U2 SnRNP specific factors
132830820 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132830820
NCBI-ProteinID:
XP_060704674
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All DBs
Position
32:complement(7512459..7593439)
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AA seq
954 aa
AA seq
DB search
MNWNKGGGGAKRGFGFGGFAITPGKKEEPKLPKAAHSVFGALGPSGGYGKTQPAQTPCFY
KVGSKRPNFDEENAYFEDDDEDDSSANVDLPYIPAENSPTRQQFVSKADESEDSEEDPLD
AYMAEVEDQAAKDIKRLDEKEFEKKNAKGIRDDIEEEDDHEAYFRYMAENPNAGVIQEEE
DDIEYDSDGNPIPPLKKVIDPLPPIDHSEIEYQPFEKNFYIEHEDLVKLSLIPLAELRQK
LNLRVSGADPPKPCSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAK
TGSGKTAAFIWPMLIHIMDQRELEPGDGPIGVIVCPTRELCQQIHSECRKFGKAYNLRSV
AVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFE
YQVRSIANHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDITQIVEIL
VAGPDKWNWLTRRLVELSSRGSVLIFVTKKANSEELAANLNQEGYTVGLLHGDMDQSERN
KVISDFKKKTIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVA
YTLMTSKDSNFAGDLVRNLEGANQYVSKELLDLAMQNPWFRKSRYKAGKGKRMNIGGGGL
GYRERPGLGSDSSDRTSSSVLSNYEAYKPSTGAMGDRMSAMKAAFQSQYKSHFVAATGSA
PKITGSAAGTSNWTSAGSLSIIPTCPLGNPVTNQLQVPSSNSGSSTRNKDSNSRPAEVKS
NRLVDGSSSRFESSSRHSDNFGRHSDGGSRYSDSSSRHGDSSSRHSVSKYNDRGGDGRHS
DRGSERHGDRNSERHVDRSDSRHSDRRSDSRHGDRHGESRSSDSRHCESRSSSQNRSGGD
SGSMNETGNSGENRSGNESRNGDSRSGNRTNSAENDGFAVPEPPPRKKRSRWDN
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggaggtggtggagcaaagaggggatttggttttggtggctttgcc
attacgcctggaaagaaagaagaaccaaagctgccaaaggcagcacattctgtatttggt
gcactgggcccatcaggaggatatggaaaaacacagccagctcaaacaccctgtttctat
aaagtgggctcgaaacggccaaactttgatgaagaaaatgcgtactttgaagacgatgac
gaagatgacagttcagcaaatgtcgacttgccttacatccctgcagaaaattctccaacc
agacaacagtttgtttctaaagctgatgaatctgaagacagtgaagaagatcctttggat
gcatacatggctgaagtggaggaccaggctgccaaagatataaaaaggttggatgaaaag
gagtttgaaaagaaaaatgcaaagggtataagggatgacattgaagaggaagatgaccat
gaagcctattttcggtacatggctgaaaatccaaatgctggtgtgattcaggaggaggaa
gatgatattgaatatgacagtgatggtaatcctattcctccactaaaaaaagtcattgat
ccattgcctcctattgaccactctgagatcgagtaccagccatttgagaagaatttctac
attgaacatgaagacttggtgaaactttcactcataccattagctgaactccggcagaaa
ctgaatttgagagtctctggagctgatcccccaaaaccttgcagtagttttgctcacttt
ggctttgatgagcaattaatgcatcaaatccgaaagtcagaatatacacaaccaacgcca
atacagtgtcagggcgtccccattgcactgagtggcagagacatgatcggaattgccaaa
actgggagtggtaaaaccgcagcatttatctggccaatgttgattcacatcatggaccag
agggagctggagcctggggatgggcctattggtgtgattgtttgtccaaccagagaactt
tgtcaacagatccattctgaatgtcggaagtttggaaaagcctacaacctgaggtcagtg
gctgtgtatggtggaggcagcatgtgggaacaagcaaaggctcttcaagaaggggcagag
attgtcgtttgcacaccgggccgattaatagaccatgtgaaaaagaaagccaccaatctc
cagagagtgacctatttggtgtttgatgaagctgacagaatgtttgacatgggctttgaa
tatcaggtccgatcaatagcaaatcatgtccgtccagacagacagactctgttgttcagt
gctactttccggaagaaaattgagaggctggctcgtgacattctcgttgaccctattcga
gttgtgcagggagacataggagaggccaacgaggatattactcagatcgtggagattctt
gtagctggtcctgacaagtggaactggctcacgaggcggctggtagagttgtcatcgaga
ggaagtgttctgatttttgtgaccaagaaagctaatagtgaagagcttgctgccaattta
aaccaggagggatacactgttgggctgttacatggtgacatggatcagagcgaaagaaac
aaagtaatttctgacttcaagaagaagacaattcctgttcttgtggctacagatgtagca
gcacgtggtttggatattccgtccattaaaacagtgattaattatgatgtggctcgtgat
attgatacacacacacacagaattgggcgtactggcagagcaggagagaaaggtgttgca
tatacgttgatgacaagcaaagacagtaatttcgctggagatcttgttcgcaatttggaa
ggagccaaccagtatgtttccaaagaattattggacctagcaatgcagaacccgtggttt
cgaaagtctcgttacaaagctgggaaagggaagaggatgaatatcggaggaggaggatta
ggctacagagagcgtcctgggctgggttcagatagctctgacagaacatcaagcagtgtg
ctgtctaactatgaagcatacaagccatctacaggagcaatgggcgatagaatgtcagct
atgaaagcagcatttcagtcacaatacaaatcgcactttgttgcagccactggtagtgct
cctaagatcacaggttctgctgctggtactagcaactggacaagtgctgggagcctcagt
attattcctacttgccctctgggcaatccagtcaccaaccaactgcaggttcccagcagt
aacagtggaagtagcactcggaataaagacagcaacagtcgtcctgcggaggtcaagagc
aatcgtcttgttgatggcagctctagccgttttgaaagcagcagtcgtcatagtgacaac
tttggtcgtcatagcgatggtggcagccgttacagtgatagcagcagtcgtcacggtgat
tccagcagccgccactctgtcagcaagtacaacgatcgcggaggtgacggcaggcacagt
gaccggggcagtgagaggcatggtgatcggaacagtgaacggcatgttgatcgcagtgac
agccgacacagcgaccggcgcagcgacagtcggcatggtgacaggcatggtgagagtcga
agtagtgacagtcggcattgtgagtccaggagttccagccaaaaccgaagtggtggggac
agcgggagcatgaatgagaccgggaatagcggagagaacaggagcggcaatgaaagcagg
aatggagacagcagaagtggcaatagaaccaattctgctgagaatgatggctttgctgtg
ccagaaccacctcccagaaagaagaggagcagatgggacaattaa
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