Hemiscyllium ocellatum (epaulette shark): 132832189
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Entry
132832189 CDS
T09720
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132832189 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hoc03032
]
132832189 (topbp1)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132832189 (topbp1)
DNA replication proteins [BR:
hoc03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
132832189 (topbp1)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
132832189 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
132832189
NCBI-ProteinID:
XP_060705939
LinkDB
All DBs
Position
34:complement(33556780..33630140)
Genome browser
AA seq
1500 aa
AA seq
DB search
MPSSAKSEPFLVKFIKSKGKDSEYFTKAYKAIKEFKSEDFLQMIHEDEVFNLKVKDSSLY
ICDPFEGDAYDHLKQLGCRIVGPQVVVFCLQQQQSVPEAVHPVYSMVMADVVVSCTSLDK
QTRDDVHKQVQLMGGRILRDFNISVTHLIAGEVGSKKYLVAASLKKKILLPSWVKACWEK
AKKGIISLTDVDMEEHLCPPFLGCTICVTGLSSQDRQEVQRLTLENGGQYSGQLKMNDCT
HLIVQEPKGQKYECAKKWNVYCVSIQWFFDSIKHGTCQDESNYKVESETKPTEVAPSTST
PTNLGDALSSRPLSDVSHISNISTSCINESAFSSAMAAKLEAPDDHLEAIDIDLSELPED
LLDGCKIYLTGFSGKKLDKLRRMINFGGGIRFNQVCEDVTYIIMGEEDKELKHSLNKISN
RPYVVTARWLVDCFSKKCLLPVEQYFHPSYQPDIPILQRPSIQAHLTLNGSKARRTSTVS
PDGQQEADDDLLLQYLENDKSVVGSENQDKTRNNLSDTLHKTEYQNNQSANTSIYETESC
AEQGIFWKKKFLIFGFANEDETYMAELIQSNSGKVLRPHTRIVADFAVVPLLGTQVDATV
AEVVTNTWLAMCIDQQRILASQSNALFTPISVVEGSTPLTNCVLSISQFTGVERDALFNI
AELLGAQVQEFFVRKANLKKGMLASTHLVLQEPQGSKYEAAKKWNLPAVTASWLFASAQL
GKKANESKFFVENAISAVAEMNQQSKASSVDKVQQQTPEHPLSKLKRMQSSVVTPLDIKR
FQSKAFQLVLSQQNRTETTETRAEVEVPSQQREANLLLDTPSKFLCKDKLFKPSFDVQDA
LAVLETPKNPDQRNRKMSTPLSEVIGRNLKVALANSTRNTIVQTAASPQLHVSKPAQEET
KVLADVVICVSKKLGKKQGDLNAIAASLGADYRWSFDETVTHFIYQGRQNDSNREYKSIK
EKGIHIVSEYWLFACADEQKKVPESLYPHTYNPNMSLDMSAIQETRVSTQTYLSQARCRE
EQTSATPEAEELESENDEQLKVGRPPQDEQSEECGDLTETSEMRENFQRQLQEIMSATRV
ERSVGHRGAMSRGALEYSPTSADSAVRSGRSRALESLRRSHSAVAEINTEPSQNEQIIWD
DPTAREERAKLANNMQWPGSPSQYSEQFQKNTEQVEERNAKHKDSLTDSEIAAIEIPQCL
PVTNGDILMKDDRLTPTPQAPSIAFPLTKPPVAPQPKEQVAAVDSNTKETHVQRRFQLSS
LNPQERIDYCHLIEELGAVVLDRQCFDPSCTHIIVGQPLRNEKYLASMAAGKWVLHRSYL
EACRAAAKFIQEENYEWGSSSILDVLPGISVQQKKLAVAAMRWRKNLELLRQRNPTAEIG
AFTGWKVILNFDHAKEAGFRRLLLSGGARVLPNHLLPEYKDATHLFADFSKLKPEDPRVN
LAEAVEHNVMCLKPEYIADYLIQEHPPPVENYYLTAESGMGTRKRKSSGDDSDPRKCRKS
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atgccgagctctgccaaatcagaaccttttcttgtaaaattcataaaatcaaaagggaaa
gattctgaatatttcacaaaagcatataaggctattaaagaatttaaatctgaggacttt
ctgcagatgatacatgaagatgaagtatttaacttgaaagtaaaagacagctcactttat
atatgtgacccatttgagggagatgcttacgatcacctgaaacagcttggatgtagaatt
gttggcccacaagtggttgtattttgtcttcagcaacaacagagtgtacctgaagctgta
catcctgtctacagtatggtcatggctgatgtggtggtttcatgcaccagtttggataag
caaaccagggatgatgtacataaacaagtacaactgatgggtggtcggatccttcgagat
ttcaacatctcggtaactcatctgatagctggagaggttggaagcaagaagtatttagta
gctgccagtctgaaaaagaaaattttacttccatcctgggttaaggcatgctgggaaaaa
gctaaaaagggcatcattagcctaacagatgtggatatggaggagcacctctgtcctcca
ttccttggctgcactatctgtgtaactgggctgagtagccaggacagacaggaagtacag
cggcttaccttggagaatggaggccagtactccgggcagctgaagatgaatgattgcaca
catttgattgtgcaagaacctaaaggccagaagtatgaatgtgcaaaaaaatggaatgta
tactgtgtatctatccaatggttcttcgattctatcaagcatggtacttgccaagatgaa
agtaattataaagttgaatctgaaactaaacctacagaggtagctccaagcacttcaact
ccaacgaacttgggagatgcactgagctcccgacccctctccgatgtgagtcatatttcc
aatattagcacaagctgtataaatgaatctgcattctcctctgccatggctgctaaactt
gaagctcctgatgaccatcttgaggcaatagatattgatctttctgaacttcctgaggac
ttgctagatggatgtaaaatctatttgactggatttagtggcaagaaattggataaatta
aggcggatgatcaattttggaggtggtattcgatttaatcaagtctgtgaagatgttacc
tatataatcatgggagaagaggataaggagttaaaacactctctcaacaaaatatcaaac
aggccgtatgtggttacagcaagatggttagtggactgcttttccaagaagtgccttctt
cctgtggagcagtatttccatccaagctatcaacctgatattccgatactgcaacgtccc
agtatccaagctcatttgactttaaatggcagtaaggcacgacgcacatccacagtcagt
cctgacggacagcaggaagcagatgatgatctcctgttgcagtaccttgagaacgacaaa
tctgtagttggatctgaaaatcaagataaaacacgaaataacttgagtgacactcttcac
aaaactgagtaccaaaacaatcagtcagcaaatacctccatatatgaaacagaatcatgt
gctgagcagggaatcttttggaaaaagaagtttctaatatttggctttgctaatgaagat
gaaacctatatggctgaattaattcagagcaatagtggaaaagtgctgcggccccacact
cgaattgttgctgactttgctgtcgtgcctttattaggcactcaagtagacgcaactgta
gcagaagtcgttacaaacacatggctggcgatgtgcattgatcagcaacgtatactggct
tcacagtcaaatgccttattcactcctatatctgttgtggaaggaagcacaccattgact
aactgtgtgttgtctattagtcaatttactggagttgaaagagatgcactatttaatatt
gcagaactacttggagcacaagtgcaagagttttttgttcggaaagcaaatttgaagaaa
ggcatgcttgccagcacccacctggtcctacaggagccacaaggctccaaatatgaagct
gcaaagaaatggaatttaccagctgtgactgcatcttggttatttgcgtctgctcaatta
gggaaaaaagctaatgaaagcaaattctttgtggaaaatgctatcagtgctgttgctgaa
atgaatcagcagagcaaggcctccagtgtcgacaaggtgcaacaacagacacctgagcat
cccttatccaaactgaaacgcatgcagagctctgttgtcactccactggatataaagaga
ttccagagtaaagccttccaactggtcttatctcaacaaaatagaactgagacaacagaa
acaagagcagaagtagaagtacccagccaacagagagaagccaacttgctacttgacaca
ccttcaaaattcctgtgcaaggacaagctgttcaagccatcatttgatgttcaggatgca
ttggctgttctggaaactcctaagaatccagatcagcgtaacagaaagatgagtactcca
ctatccgaagtcattggcaggaatctaaaagtagccctggcaaatagtacacggaacaca
atagtgcaaacagcagccagtccacaacttcatgtgtctaaaccagcacaggaagagact
aaagttctggcagacgtagtaatttgtgtgagtaagaagcttggtaagaaacagggggat
ttgaatgcaattgcagcctccctgggagcagattacagatggagttttgatgaaacagta
acccatttcatctaccagggacggcagaatgacagcaatcgagaatacaagtctatcaaa
gaaaagggcatacacattgtctctgaatattggctatttgcatgtgctgatgaacaaaag
aaggtgcctgaatctctctatcctcacacgtataatccaaatatgagtttggatatgagt
gcaattcaagaaaccagagtgtccacacagacgtatctttctcaagcaagatgcagagaa
gagcagacttctgccacaccagaggctgaggaactagaaagcgaaaatgacgaacagctg
aaagttgggagacctccccaggatgaacaaagcgaagaatgtggagatttgactgaaact
tcagaaatgagagagaatttccaacgtcagttacaagaaataatgtctgctacaagagta
gagaggtcagtagggcaccgtggagccatgtcaagaggagccttggagtactctcccaca
tcagctgatagcgcagttcgttctggacggagcagagcactggagtccctcaggcgctca
cattcagcagttgcggaaatcaatacagagccatcacagaatgagcagattatctgggat
gatccaacagccagagaagagagagccaaactagccaataacatgcagtggccgggcagc
ccctctcagtactctgagcaatttcagaaaaatacagagcaagtggaggaaagaaatgca
aaacacaaagactctttaactgattcagaaattgctgcaatagaaattcctcagtgtctt
cctgtaacaaatggtgacattctgatgaaggatgatcgtctcacccctacacctcaggct
cctagtatagcatttccactgacaaaaccacctgtggcaccacagcctaaagaacaggtt
gctgctgttgacagtaatactaaagaaacacatgttcagcgcaggttccagttatcctca
ttgaaccctcaggagcggattgactactgccatcttattgaggagttaggtgcagtagtg
ttagatagacaatgctttgacccatcctgcacgcacatcattgttgggcaaccattacgt
aatgaaaaatacttggcttcgatggcagctgggaaatgggttcttcatcgatcgtatctc
gaggcatgcagagctgctgccaaatttatccaggaggaaaattacgaatggggcagcagt
tccatcctggatgtgttgcctggaattagtgtccaacagaagaagcttgcagtggcagcc
atgagatggaggaaaaacctggagttgctaagacaaaggaatccaactgctgagattggt
gcatttactggttggaaagttattttaaactttgatcatgccaaggaggcaggtttcagg
cgtcttcttctttcaggtggagccagggtacttcctaatcatttgttacctgaatacaaa
gatgccactcatctgttcgctgacttcagcaaactaaaaccagaagatccgagagtgaat
ttggctgaggctgttgaacataatgtgatgtgcctcaaaccagaatacattgcagactac
ctcatacaggaacatcctcctccagttgagaattactacctaactgctgagtctgggatg
ggaactcgtaaacggaaatcatctggagatgattctgatccaagaaagtgtagaaaaagt
tga
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integrated database retrieval system
