Hemiscyllium ocellatum (epaulette shark): 132832692
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Entry
132832692 CDS
T09720
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03013
Nucleocytoplasmic transport
hoc03015
mRNA surveillance pathway
hoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132832692 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
132832692 (ddx39b)
03015 mRNA surveillance pathway
132832692 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132832692 (ddx39b)
03041 Spliceosome [BR:
hoc03041
]
132832692 (ddx39b)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132832692 (ddx39b)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132832692 (ddx39b)
Spliceosome [BR:
hoc03041
]
Complex C
Other components
EJC/TREX
132832692 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132832692 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132832692
NCBI-ProteinID:
XP_060706766
LinkDB
All DBs
Position
35:14118847..14156737
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAAGDASEVPLKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQISVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEELLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQSR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacgatgttgacaatgagctcttggactatgaggatgatgaggtcgagaac
caggcagcgggtgatgcgtcagaggtgccgctcaagaaggatgtgaagggctcatacgta
tctatacacagttctgggttccgagatttcctgctgaaaccagagttactgcgtgccatt
gtcgactgcggttttgagcacccctctgaagtacaacatgagtgcattccccaagcaatt
ctgggcatggatgtcttgtgtcaggccaagtctggcatgggaaaaacggcagtgtttgtc
ttggctactcttcaacaactggaacctgtcaccggacaaatttcagtcctggtgatgtgc
cacactcgagaactggcattccaaatcagcaaggaatacgaacggttctccaagtacatg
ccaagcgtgaaggttgcggtgttttttggtgggctctccattaagaaggacgaggagttg
ttgaagaagaactgcccgcacattgtggtgggcacccctggcaggatcctggcactggct
cgcaacaagtctctgaacctcaaacacatcaagcacttcatcctggacgagtgtgacaag
atgcttgagcagctcgacatgcgtcgagacgtccaggagatctttcgcatgacccctcat
gagaaacaggtcatgatgttcagtgccaccttaagcaaggagatccgccctgtttgtcgc
aagttcatgcaagacccgatggagatctttgtggacgatgaaaccaagctgactctgcat
ggtctgcagcagtactacgtgaagctgaaagacaacgagaagaaccgcaagcttttcgac
ctgctcgatgttctggagtttaatcaggtggttatttttgtgaagtcggttcagaggtgc
attgccttggcacagctcctggttgagcagaacttccccgccatagccattcaccggggc
atgccccaggaggagagattatctcgataccagcagttcaaggatttccagcgacggata
ctggttgccaccaacttgtttggccgtgggatggacatcgagcgagtcaacattgtattt
aattatgatatgccagaggattctgacacctacttacacagggtggcgagagctggccgt
ttcggtaccaagggactggctatcacgttcgtgtcagatgaaaatgacgccaagatcctc
aatgatgtgcaggacaggtttgaagtgaacatcagcgaactgcccgacgagatcgacatt
tcctcatacattgaacagagcagatag
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