Hemiscyllium ocellatum (epaulette shark): 132832898
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Entry
132832898 CDS
T09720
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132832898 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hoc03041
]
132832898 (dhx16)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132832898 (dhx16)
Spliceosome [BR:
hoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132832898 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
132832898 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
PWI
Motif
Other DBs
NCBI-GeneID:
132832898
NCBI-ProteinID:
XP_060707093
LinkDB
All DBs
Position
35:21948163..21995597
Genome browser
AA seq
1036 aa
AA seq
DB search
MGSLEKWVNDELHQLLGLSDKYVAQFLIGTAQRSDSVADFIRRLEETGTIDITQGVRRFA
DELWTKIPRKQRVEKAARAVEREALAMQQKNRTYLLLEDSEDSGPEEKQSHSKGKRKRKH
IRKKRAASSESDSDHKMKRNPSPQKLSGSEEEEWEKEEKDRLKDLEERDAFAERIKQRDK
DRTRNILERSDKKAYEEAQKRLKMGEEDRRAMIPELRKRSRRDYLGKREQEKLEDLEAEI
LDDEYLFSATDLSSREKQQLDYKKKVRDLAREYKAAGEQEKQEQSNRYYMPEESRSKKVP
DRYEEPKADDKHAPRDEQRRWEEEHMDAALLKFGARDARERNQQKEYEFVLEEDEMIDFV
TAVTMQGTVSKDEKVEMSEAERQKMTLQEVRRSLPVFPYRQDLLAAIAEHQILIIEGETG
SGKTTQIPQYLYEEGYTAGGMKIGCTQPRRVAAMSVAARVAQEIGVKLGNEVGYSIRFED
CTSERTVLKYMTDGMLLREFLTEPDLAGYSVVIIDEAHERTLHTDILFGLIKDISRFRPD
LKVLIASATLDTEKFSTFFDDAPIFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVT
QAPGDILVFLTGQEEIETTCEMLQERCRRLGSKIAELLVLPIYANLPSDMQAKIFEPTPA
GARKVVIATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPCSKASANQRAGR
AGRVAAGKCFRLYTAWAFKHEMEETSIPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPP
HETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASERYQCSEEILTIAA
MLSVNNAIFYRPKDKVVHADNARMNFFLPGGDHLVLLNVYTQWVESGYSTQWCYENFIQF
RSMRRARDVRDQLEGLMERIEVEMKSSAGDNVLIRKAITAGFFYHTARLTRTGYKTVKHQ
QAVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLLEVAPHYYKSKELQDAA
SKKMPKKVGKTREELG
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgggctcactggagaagtgggtgaacgatgagcttcaccagctgctgggcctgagcgat
aagtacgtggcacagttcctgatcggcactgcccagcgcagtgacagcgtggcggacttt
atccggcgcctggaggagacggggaccattgacatcacgcagggagtccgacgtttcgca
gacgagctctggacgaagatccccaggaagcagagggttgagaaggcagcgcgtgccgtc
gagcgagaggccctcgccatgcagcagaagaaccggacttacctgttactggaggacagc
gaggacagcgggcccgaagagaagcagagccacagtaaaggcaaacggaagcggaaacac
atccggaaaaagagggcggcctcatcggagagtgactccgaccacaaaatgaaaaggaac
ccgtcgccacagaaactgtcgggatctgaagaagaagaatgggaaaaggaggagaaggat
cgcttgaaagatctggaggagcgagatgctttcgcagagcgtatcaagcaacgggacaag
gacaggacccgaaatatcctggagcgctctgataagaaggcctacgaggaagctcagaaa
cgtctgaagatgggcgaggaagaccggcgggcaatgatcccggagctgcgcaagaggtcc
cggagggattacctgggcaagcgagagcaggagaagctggaggacctggaggcggaaatc
ctggacgacgagtacctgttctccgcgactgacctcagcagccgggagaagcagcagctg
gactacaagaagaaagtgcgcgacctggcgcgggagtacaaagcagccggagagcaggag
aagcaggagcagagcaaccgctattacatgcccgaggagtcccgcagcaagaaagttccg
gatcgctacgaggagcccaaggcggatgacaagcatgcccctcgggacgagcagaggcgt
tgggaggaggagcacatggatgcagcgctgttaaaattcggggcccgggacgccagggaa
cgtaaccagcagaaggagtacgagtttgtgctggaggaggacgagatgattgactttgtg
accgccgtcaccatgcagggaaccgtgtctaaggatgaaaaagtagagatgtcagaggca
gagaggcagaagatgaccctccaggaggtgaggaggagcctacctgtcttcccctaccgt
caggacctgctggcagctatcgctgagcaccagatcctcatcatcgagggcgagacgggc
tctggcaaaacaacacagatcccccagtatctgtacgaggagggctacacggccgggggg
atgaagatcgggtgcacgcagcctcggcgcgtggcagccatgagcgtggctgcccgagtg
gcacaggagatcggggtcaagctgggaaatgaggtcggctacagtatccggtttgaagac
tgcacctcagagcggacggtgctaaaatacatgacagatgggatgctgctgagggaattc
ctcacggagccggacttggctggatatagcgtggtgatcattgacgaagcccacgagcgc
acacttcacactgacattctcttcgggctgattaaagacatctcccgcttccgccctgac
ctgaaggtcctgattgcgagcgccaccctggacaccgagaagttctcgacgtttttcgac
gatgctccgatctttcggatcccggggcgacggttccccgttgatatttactacaccaag
gcccctgaagcggactatctggaagcctgtgtggtttctgtcctgcagatccacgtcact
caagctcctggcgacattctggtgttcctcaccggtcaggaggaaatcgagaccacgtgc
gagatgttgcaggagcgatgccgtcgcctgggctccaagattgccgagctgctggttctc
cccatttacgccaacctcccctcagacatgcaggccaagatctttgagcccaccccagca
ggtgccaggaaggtcgtcatcgccaccaacatcgcggagacctccctgaccatcgacggg
atcatctatgtgatcgaccctggtttctgcaagcagaagagttacaatgcacgcacaggc
atggagtctctcattgtcacaccctgctccaaggcatcagccaaccagcgagctggcagg
gctggccgcgtggctgccgggaagtgcttccgtctctacacagcctgggccttcaagcac
gaaatggaggaaacgtccatcccggaaatacagcgaacaaacctgggcaacgtggtgctg
ctgctgaagagcttaggaatcaacgacctgatccactttgatttcatggacccccctcct
cacgagaccctcgtgctggccttggagcagctgtacgccctgggggctctgaaccacctc
ggagaactgaccaagctcggtcgcaggatggcagagctccctgtggaccccatgctgtcc
aaaatgatcctagcctctgagaggtaccagtgctctgaggagatcctaaccatcgcagcc
atgctgtcggtcaacaacgccatcttctaccggcccaaagacaaggtggtgcatgctgac
aatgctcgcatgaacttcttcctgcctggaggggatcatctggtcctgctcaacgtctat
acacagtgggtagaaagcggctactccacgcagtggtgttacgagaatttcattcagttc
cggtcgatgcggagagccagggacgtgcgggaccagctggagggtctgatggagaggatt
gaagtggagatgaaatcatctgcgggcgataacgtcctcatccgcaaggccatcaccgct
ggcttcttctaccacaccgcccggctcactcgcactggctacaagacggtgaagcaccag
caggcggtctacgtccaccccaacagcagcctgttcgaggagcagccccgctggctcatc
taccatgagctggtcttcaccacaaaggagttcatgagacaggtgatcgagatcgacagt
gggtggctgctggaggtggctccgcattactacaaatccaaggagctgcaggatgcggcc
agcaagaagatgccgaagaaagtgggcaagactcgggaggagctcggctga
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integrated database retrieval system
