Hemiscyllium ocellatum (epaulette shark): 132835136
Help
Entry
132835136 CDS
T09720
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03020
RNA polymerase
hoc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132835136 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
132835136 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoc03021
]
132835136 (polr2a)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132835136 (polr2a)
Enzymes [BR:
hoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132835136 (polr2a)
Transcription machinery [BR:
hoc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132835136 (polr2a)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132835136 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
132835136
NCBI-ProteinID:
XP_060710440
LinkDB
All DBs
Position
44:complement(2699753..2733393)
Genome browser
AA seq
1955 aa
AA seq
DB search
MQGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLTKTMKVLRCVCFFCSKLLVDSN
NPKIKDILMKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQEGEEDLTKEKGHG
GCGRYQPRIRRVGLELYAEWKHVNEDSQEKKILLNPERVYEIFKRITDEECVILGMDPKY
AKPEWMILTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNNQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYRVERHMCDGDIVIFNRQPTLHKMSMMGHKVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFMDRGEVMNLLMHLSTWDGKVPQPSILKPRPLWTGKQIFTLVIPGHINC
IRTHSTHPDEEDNGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHITFLEMGH
DITRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVIQLRYGEDGLAGESVE
FQNLASVKPSHKNFEKKFKLEYTNERSLRRTLQEDIVKEILSNAAIQNDLEVEFEKMKED
REVLRAVFPTGDSKVVLPCNLLRMIWNAQKIFHINTRTVTDLHPIRVIEGVKELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSGEAFEWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPDPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEQEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
ASAHGEMDPMKGVSENIMLGQLAPAGTGSFDLLLDAEKCKYGMEIPTNIGGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY
TPTSPNYSPTSPSYSPTSPSYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQS
PTYTPSSPSYSPSSPSYSPTSPKYSPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYS
PTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSP
KGSTYSPTSPGYSPTSPTYSLTSPAISPEDSDEEN
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacctccttccggagatagcgcatgcccactgcgcaccatcaaaagggtccaa
tttggaatcctcagtccagatgagatgaaacgaatgtctgttactgaaggagggatcaag
tactcggagaccacagagggaggccggcccaaactgggtggcctgatggaccctcgccaa
ggagtcatcgagcgcacgggacgatgccagacctgtgcaggtaacatgactgaatgtcca
ggtcactttggacacatcgaactggcaaagcctgtctttcatgttggctttcttacaaag
acgatgaaagttctccgatgtgtctgtttcttctgttccaagttgctggtagattctaat
aatcccaaaatcaaagacatcctgatgaagtcgaaagggcagccccggaaacgcctgact
catgtctatgagctgtgtaaagggaagaacatctgtgaaggtggcgaggagatggacaac
aagtttggagtggagcagcaggagggtgaggaagatctcaccaaggagaagggtcatgga
ggctgtggtcgctaccagcctcgcatccggagggtgggtctggagctctacgcagaatgg
aaacacgtaaatgaagactctcaggagaagaagatcctgctgaaccccgagagggtgtac
gagatcttcaagcggataacagatgaggagtgtgtgatcctgggcatggatcctaagtac
gccaagccagagtggatgattctgacagtccttcctgtcccaccactctctgtgcgtcca
gctgttgtcatgcaaggctctgcccggaaccaggatgacctgacccacaaactggctgac
attgtgaaaattaacaaccaactgcgtcggaatgaacagaatggagctgcagctcatgtc
attgctgaggatgtcaaactcctgcagtttcacgtggccaccatggttgataatgagtta
cctggactaccgagggcgatgcaaaagtcaggccgcccactgaagtccctcaaacagagg
ctgaaggggaaggaggggcgtgtccgtgggaacctgatgggcaaacgtgtggatttctca
gcccgtactgtcatcacacctgatcccaacctctccatcgatcaggtcggtgtgccacgg
tccatcgctgccaacatgaccttcccagaaatcgtcacaccattcaacatcgacagactc
caggagttggtgaggagaggtaacaaccaatatccaggcgccaagtacatcatccgagac
aacggggatcgaatcgatttgcgatttcatcccaaacccagcgaccttcatctgcaaatt
ggctacagggtggaaaggcacatgtgcgatggtgatattgtcatcttcaaccgacagccc
accctgcacaaaatgtccatgatggggcacaaagtgcggatcctgccctggtcaaccttt
cgtctcaatctcagtgtgaccactccgtacaatgccgattttgatggtgatgaaatgaat
cttcacttgccccagtccctggaaacccgagctgagatccaggagctggccatggtgccc
aggatgatcgtcacccctcagtccaacagacccgttatgggcattgtgcaggacacactg
acagctgtccgcaagttcaccaagcgagatgtcttcatggaccggggtgaagtcatgaat
cttttgatgcatctctcaacctgggatgggaaagttccccagccttccatcctgaaacca
aggccactgtggactggcaagcagatcttcaccctggtcatcccaggccacatcaactgt
atccggacacacagcacccacccagatgaagaggacaatggcccttataaacacatctca
ccgggtgatacaaaggtgattgtggagaatggagagctgatcatgggtatcctgtgcaag
aagtcgctgggcacatcagctggctccctggtccacatcaccttcctggagatgggtcat
gacatcacccggctcttctacagcaacatccagacagtcatcaacaactggctattgatt
gaaggccacactattggtattggagactccattgctgacgctaaaacctaccaggatatt
cagaacactatcaaaaaggccaaacaggatgtgattgaggtcatcgagaaagctcacaac
aacgagttggaacccactcctggtaacaccttgaggcaaaccttcgagaaccaggtcaac
cgaatcttgaacgatgcccgtgataagaccggttcctctgctcagaaatctctctctgaa
tacaataacttcaaatccatggtggtggctggctccaagggatcgaagattaacatttca
caggttattgctgttgtcgggcagcaaaacgtggaggggaagcgaattcccttcggtttc
aagcaccgcaccctgccgcactttatcaaagatgactacggccccgagagcagaggcttt
gtggagaactcttatctcgctgggctaacccccaccgagttctttttccatgctatggga
ggccgcgagggtctgatcgatactgctgtcaagactgctgaaactggttatatccagaga
aggttaatcaagtccatggaatcagtgatggtaaaatatgacgcaacggttcgcaactcc
atcaaccaagtgatccagctacgttatggagaggatgggctggcaggggagagtgtggag
ttccagaacttggcatcagtgaaaccatcccacaaaaacttcgagaagaagttcaaactg
gagtacactaatgagcgcagtctacgcaggaccttacaggaagacattgtgaaggagatc
ctcagtaatgctgccatccagaatgacctggaggtggagtttgagaagatgaaggaagac
cgagaggttctgagggctgtgttccccactggagacagcaaggtggtgctgccctgtaac
ctcttgcgtatgatctggaacgcacaaaaaatcttccacattaacacccggacagtgact
gatctgcatccgatccgtgtgattgaaggggtgaaggagctgagtaagaagctgatcatt
gtgaacggcgatgacccactgagtcgtcaggctcaggagaacgccacgctgctgtttaac
atccacctgcgctccaccctgtgcagccggcggatgaccgaggagttccgactcagcgga
gaggccttcgagtggctgctgggggagatcgaagccaagttcaaccagtccatcgcccac
cctggtgagatggtgggtgctttggctgcccagtcgctgggagagcctgccacacagatg
accctgaacaccttccactatgctggagtgtcagccaagaatgtcaccctgggtgttccc
cgtctgaaggagctgatcaacatctcgaagaagcccaagaccccctccctcactgtcttc
ctgctgggccagtctgcccgggacgcagaacgtgccaaggatattctctgtcgattggag
cacaccaccctgaggaaggtcactgccaatactgccatctattatgatcctgacccccag
aacactgtggtgtcagaggaccaggagtgggtcaatgtctactatgaaatgccagacttt
gatgtgaccaggatctccccctggctcctccgtatcgagcttgaccgcaagcacatgact
gaccgaaagctgaccatggagcagatcgcagaaaaaatcaacgctggtttcggtgatgat
ttaaactgcatctttaatgatgacaacgcggagaaactggttctccgaatccggatcatg
aacagtgacgagaataaatttcaagagcaagaggaggaggtggtggataagatggatgac
gacgtattccttcgctgtatcgagtcgaacatgctgaccgacatgacactccaggggata
gaacagatcagtaaggtgtacatgcatctccctcagactgacaacaagaagaaaatcatc
atcactgaggatggggagtttaaggctctgcaggagtggattctggaaaccgatggagtc
agcctgatgagggtgctgagtgagaaggatgtggatccggtccgtacaacgtctaacgac
attgtggagatcttcacggtcctggggattgaagcagtgcggaaagccttggagcgggag
ctgtatcacgtcatctccttcgatggctcctacgttaactaccgccacttgtcactgctg
tgtgacaccatgacgtgtcggggccacttgatggccatcacccgtcacggggtgaaccga
caggataccgggccactgatgaagtgttcctttgaggaaactgtggatgttttaatggag
gcctcagctcacggggagatggacccaatgaagggggtgtctgagaacatcatgttgggt
cagcttgccccagcaggaaccggctcatttgacctgctgctcgatgctgagaaatgtaaa
tacggcatggagatcccaaccaacatcggaggcctgggagttggaggcccgactgggatg
ttctttggttctgcccccagcccaatgggagggatgtcaccagctatgactccatggaac
caaggggcaactcctgcctatggagcctggtccccgagtgtgggcagtggaatgacccca
ggagctgccggcttctctcccagcgcagcatccgatgccagtggcttcagtcccggatac
tctccggcatggtcccccacacctgggtctcccggatcccctgggccatccagtccctac
attccatctccaggtggagcgatgtctccgagttactcaccaacctctcctgcctatgag
ccaaggtctcctggtggttatacccctcagagccccagctactcacccacctccccctca
tacagtcccacctccccctcctactcacccaccagccccaattacagccccaccagcccc
agctacagccccaccagccccagctatagccccacgtcccccagttacagtcccactagt
ccgtcatactcacccacctccccctcatactctcccactagccccagctactctcccact
tccccgagttactcaccaactagtcccagttacagcccgacctcacccagttactcacca
accagtccctcctactcccccacctcaccgtcttactcccccacttctccctcctactcc
cccacctctccatcttactcccctacaagtcctagttattcccccacctcccccaactat
acccccacctctcccaactacagccccaccagtcctagttacagccccacgtcccccagt
tatacccccacctctcccaactatagtcccacctcacccagttacagtcccacatctccc
agttacagccccacctcacccagttactccccatccagccctcgctacacccctcagtca
ccaacctacactcccagctctcccagttacagccccagctctcccagttactctccgacc
agccccaagtactcccccaccagcccttcctacagccccagctctcccgagtacacgcct
acatctcccaaatacagccccaccagccccaaatattcccccaccagccccaaatattcc
cccacctcccccacctactctcccaccacaccaaagtactcccccaccagcccgacctac
tctcccacctccccagtctacacacccacctccccaaagtactcccccacctcgcccact
tactctcccacctccccgaaatattcgcccacctctcccacctactcgcccaccagcccc
aagggctcgacctactctcccacttccccgggctattcccccacttccccaacctacagc
ctcaccagcccagccatcagcccagaggacagcgacgaggagaactga
DBGET
integrated database retrieval system
