Hemiscyllium ocellatum (epaulette shark): 132835813
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Entry
132835813 CDS
T09720
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132835813 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132835813 (xab2)
03041 Spliceosome [BR:
hoc03041
]
132835813 (xab2)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132835813 (xab2)
Spliceosome [BR:
hoc03041
]
Complex B
Other components
Prp19-related factors
132835813 (xab2)
Complex C
132835813 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
RPN7
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
132835813
NCBI-ProteinID:
XP_060710884
LinkDB
All DBs
Position
45:12579435..12626949
Genome browser
AA seq
849 aa
AA seq
DB search
MNGSMQKHDVIFEEDDLPYEEEIIRNPYSVKCWIRYIEFKQSAPKHVVNMIYERALKELP
GSYKLWYNYLKQRRKQVKGKCITDPAFEEVNNCHERALVFMHKMPRIWLDYCQFLVDQCK
VTRTRRTFDRALRALPVTQHYRIWPMYLKFVRLFPLPETAIRVYRRYLKLSPENAEEYIV
YLRSIDRLDEAAVRLAGIVNDESFVSKEGKSNYQLWHELCHLISTNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQAEEDDIDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIINTYTEAVQTVDPLKATGKPHSLWVSFAKFYEENSQIRDARTIFEKATKVN
FKHVDDLASVWCEYGEMELRHENYDEALQLLRQATAVPAKKAEYFDSTEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGV
ALFKWPNVFDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERATKAVEPLEQYEMYNIYIKRAAEIYGVTHTRGIYEKAIEVLPDEHAR
DMCLRFADMECKLGEIDRARSIYSYCSQLCDPRITPSFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTNATGTVSDLAPGQSGMDDMKLLEQKAQQLAEEAER
EKPKPKDKILFVRSDASRSELAELTKQANPDEIDIDDDDDDEEGDEEPDEVPLEQKTVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaacggctccatgcagaagcacgatgttatttttgaagaagatgatctgccatatgaa
gaggaaataattcgcaatccttactctgttaaatgttggatccgctacatagagttcaaa
cagtctgcacccaaacatgtggtgaatatgatttatgagcgagcactcaaagaacttcct
ggcagttacaagttgtggtacaattacctgaaacagaggcggaaacaggtgaagggaaaa
tgtatcacagaccctgcatttgaggaggttaacaactgccatgagcgagccctggtcttc
atgcataagatgccacgtatttggctggactactgtcagttcctggttgatcagtgtaag
gtaacaagaactcgtcgaaccttcgatagggctctccgtgccctccctgttactcaacat
tatcgcatctggcctatgtacctgaagtttgttcgtttgtttcccttgccggagactgca
atcagagtctataggcgctacctgaagctgtcccctgagaatgctgaggagtacattgtg
tacctccgctctatagatcgactcgatgaggctgcagtccggctcgctggcatcgtcaac
gatgaatcctttgtctcgaaagaggggaagtcaaactaccaactgtggcatgagctttgc
catctcatttctacaaacccagacaaagtgaaatccctgaatgttggagccattatccga
ggaggtctgactcgtttcactgaccaactagggaagctctggtgttcattagctgactac
tacattcgaagtggtcattttgagaaggccagagatgtctacgaagaggcgattcaaaca
gtgatgacagttcgcgatttcacccaagtctttgatagttatgcccagtttgaggagagc
atgattgcggctaaaatggaaacgacagcagaaatggggcaagcagaagaagatgatatc
gatctggagcttcgattggcacggtttgagcagcttataaacagacgtcccctccttttg
aacagtgtactgcttcggcagaacccccacaatgtacatgagtggcataagcgggtcaaa
ctgtatgaaggaaaaccccgtgagatcataaacacgtacacagaagcggtccagaccgtt
gacccgttaaaagctactggaaagccacattcgctctgggtttcgtttgcaaagttttat
gaagaaaatagtcaaattcgggatgctcgaaccatatttgaaaaagccacaaaagtaaac
ttcaagcacgttgatgaccttgccagcgtttggtgtgaatatggggagatggaactgcgg
catgaaaactatgatgaggctcttcagttgctgaggcaagctactgcagtacctgcaaag
aaagctgagtactttgattcaacagagcctgtccagaacagagtgtacaaatcactgaag
gtctggtccatgttagcagatctggaggagagtctcggcacttttaagtctacaaaagcg
gtttacgataggattatagatctccgaattgccacgcctcaaatcatcatcaattacgca
atgtttctggaggaacacaactactttgaagaaagtttcaaggcctatgagagaggagtt
gctctatttaagtggcccaacgtgttcgatatttggaacacttaccttaccaaattcatc
gatcggtatggtgggaagaagctggaacgagctcgagacctgtttgaacaagctcttgat
gggtgtccgccgaaatttgccaaaactatctaccttctgtacgccaagctggaggaggag
tacggtttagctcgccacgccatggctgtgtacgaaagagcaaccaaggcagtcgagcct
ttggagcagtacgagatgtacaacatctacatcaaaagagcggctgaaatatacggagtt
acccacacgcggggtatctacgagaaggcgattgaggtgttgccagatgaacacgctcgg
gatatgtgcctacggttcgcagatatggaatgtaaactgggtgaaattgatcgggcccga
tccatttactcttactgctcgcagctctgcgatccacggataaccccatcattctggcag
acgtggaaggaatttgagatccggcatggtaatgaggataccattcgcgaaatgttgcgg
attaaacgtagcgtgcaggccacgtacaacacccaagtcaattttatgtcatcgcagatg
ttgaaagcctccactaatgccacaggcacagtctctgacctggcgcctggacaaagtgga
atggatgacatgaagctgctggagcagaaagcccaacagttagcggaagaagctgagagg
gaaaaacccaaacccaaagacaagattctgtttgtcaggagcgatgcgtctcgcagtgag
ctggctgaacttaccaaacaagccaatcctgatgagattgacatcgacgatgatgatgat
gacgaggaaggtgatgaagaacctgacgaggtgccactggagcagaaaacagtccccaca
gcagtgtttgggggcctgaaggatgactga
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