Hoeflea sp. IMCC20628: IMCC20628_00629
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Entry
IMCC20628_00629 CDS
T03926
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hoe
Hoeflea sp. IMCC20628
Pathway
hoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC20628_00629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoe03019
]
IMCC20628_00629
Enzymes [BR:
hoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC20628_00629
Messenger RNA biogenesis [BR:
hoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC20628_00629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKH99353
UniProt:
A0A0F7PJG0
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All DBs
Position
666383..667825
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AA seq
480 aa
AA seq
DB search
MLFSELGLSKTILDTLDGLRLTTPTPIQVQAIPLVLEGRDVIGLAQTGTGKTAAFALPIL
HRLAPGKPAAPKKARALILSPTRELSAQIARSVKDYSRKLNMTSTVVVGGVSVRPQIKAL
ASGVDILIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPAARQ
TLLFSATMPKEIRELSSRHLKNPTEVSVIPAKKTADRVEHSVMHMPTAAKIGALASLIRD
RKGERVIVFTRTKRGADKAVKRLEADGINGAAIHGNKSQGQRERALAGFRAGTVPVLIAT
DIAARGIDVPGVSLVINYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDIEK
LLKVAINVEKAPEGTYVDALADPDGDFAPLNRTQRPRQDARPQGAKPQGQGRRPGQNQGA
GKPQGRKPANGQQAGAPAANRHQPATGANQNGDQPAKSRRRRNDRRPRPEQAGDKAVARG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccgaactcggtctttccaagaccattctcgacacgcttgatggcctgcgc
ctgacaacgccgacaccgatccaggtgcaggcgataccgttggtgctcgagggccgcgac
gtgatcggcctggcacagaccggcaccggcaagaccgcagcctttgcgctgccgatcctg
caccgtctggcaccaggcaagcctgccgcgccgaagaaagcccgcgcgctgatcctgtcg
ccaacccgcgagctctcggcccagatcgcccgcagcgtcaaggactacagccgcaagctc
aatatgacctcgaccgttgtggttggcggtgtgtcggttcgcccgcagatcaaggcgctg
gccagcggcgttgacattcttatcgccaccccgggccgtttgatggatctcatcgagcag
cgtgccgtgtcgctcaacgaaatcgaagtggtggtgcttgatgaggccgaccagatgctc
gacatcggcttcatgccggcaatcaagcgcatcctcgccatgacaccggctgcgcggcag
acattgctgttttcggcaaccatgcccaaggaaatccgcgagctgtcctcgcgtcacttg
aagaacccgactgaagtgtcggtgatcccggccaagaagacggccgaccgggttgagcat
tcggtgatgcacatgccgacagctgccaagattggtgcactggcatcgctgatccgtgac
cgcaagggcgaacgcgtcatcgtcttcacccgcaccaagcgcggcgccgacaaggccgtc
aagcggcttgaagccgacggcatcaacggtgctgccattcacggcaacaagtcgcagggc
cagcgcgaacgtgcgcttgcaggcttccgtgccggcaccgtgcctgtgctgattgccaca
gacattgccgctcgcggtattgacgttcccggcgtcagcctggtgatcaattacgaactg
ccgaatgtgccggaagtctatgttcaccgtatcggccgcaccgcgcgcgccggcgccgag
ggcacggccgtgaccttctgtgcaccggacgaacgctcgctgctgcgtgatatcgaaaag
ctgctcaaggtagccatcaacgtcgaaaaggcgccggaaggcacctatgtcgatgcgctg
gctgatcccgatggcgattttgcaccgctcaaccgcacccagcgtccgcgccaggatgca
cggccgcagggcgccaagccacaaggccagggccgtcgtcccggtcagaaccagggcgca
ggcaagccgcagggccgcaagcccgccaatggccagcaagccggtgcccctgcagccaac
cggcatcagccggcaaccggcgccaaccagaatggcgaccagccggccaagtcgcggcgt
cgccgcaacgaccgtcgtccgcggcctgaacaggctggcgacaaggccgtggcacgcggc
tga
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