KEGG   Hoeflea sp. IMCC20628: IMCC20628_01977
Entry
IMCC20628_01977   CDS       T03926                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
hoe  Hoeflea sp. IMCC20628
Pathway
hoe02024  Quorum sensing
hoe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hoe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IMCC20628_01977
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    IMCC20628_01977
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hoe03019]
    IMCC20628_01977
   03036 Chromosome and associated proteins [BR:hoe03036]
    IMCC20628_01977
Messenger RNA biogenesis [BR:hoe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     IMCC20628_01977
Chromosome and associated proteins [BR:hoe03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    IMCC20628_01977
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AKI00682
UniProt: A0A0F7PHJ4
LinkDB
Position
2047178..2047426
AA seq 82 aa
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
ISTIMPSQPVQMFENEDAATGA
NT seq 249 nt   +upstreamnt  +downstreamnt
atggcggaacgttcacaaaatctgcaggacctatttctcaacacggttcggaaacagaaa
atctcgctgacgatcttcttgatcaacggagtgaagttgaccggtgtggtcacctcattt
gataatttctgcgtcctgctgaggcgcgatggtcattcgcagcttgtctacaagcatgcg
atttccacgatcatgccgagtcaaccggttcaaatgtttgaaaatgaggacgccgcaacc
ggcgcctga

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