Hoeflea sp. IMCC20628: IMCC20628_02203
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Entry
IMCC20628_02203 CDS
T03926
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hoe
Hoeflea sp. IMCC20628
Pathway
hoe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hoe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMCC20628_02203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoe03021
]
IMCC20628_02203
03400 DNA repair and recombination proteins [BR:
hoe03400
]
IMCC20628_02203
Enzymes [BR:
hoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMCC20628_02203
Transcription machinery [BR:
hoe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMCC20628_02203
DNA repair and recombination proteins [BR:
hoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMCC20628_02203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
AKI00906
UniProt:
A0A0F7PL62
LinkDB
All DBs
Position
complement(2297609..2298619)
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AA seq
336 aa
AA seq
DB search
MIQKNWQELIKPSKVEFNISDRTKATVVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAV
QIDGVLHEFSSIPGVREDVTDIILNIKEIAIRMEGDEAKRMVVRKQGPGVVKAGDIQTVG
DIEILNPEHVLCTLDEGAEIRMEFTVNNGKGYVPADRNRAEDAPIGLIPVDSLYSPVKKC
SYKVENTREGQVLDYDKLTLNIETDGSVSGEDAVAYAARILQDQLGVFVNFDEPQKEVHE
ETVAELAFNPSLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN
EIKEVLASMGLHLGMEVPSWPPENIEDLAKRYEDQY
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgattcagaaaaactggcaggaattgatcaagccgagcaaggtcgagttcaacatctct
gatcgcacaaaggcgaccgtggttgcagaaccgcttgagcgtggcttcggcctgactttg
ggcaatgccctgcgtcgcgttcttttgtcctcactgcgtggcgctgccgtcaccgcggtg
cagatcgacggcgtgctgcatgaattctcttcgatcccgggcgttcgtgaagatgtcaca
gacatcatcctgaacatcaaggaaatcgccatccgcatggaaggcgacgaagcaaagcgc
atggtcgttcgcaagcagggcccgggtgtggtcaaggctggcgacattcagaccgtaggc
gacatcgagatcctcaacccggaacacgtgttgtgcacgcttgatgaaggcgctgaaatc
cgtatggagttcaccgtcaacaacggcaagggctatgtgcctgctgaccgcaatcgtgcc
gaagatgcgcctatcggcctgattccggtcgacagcctctattcgccggtcaagaagtgc
tcctacaaggtggaaaacacccgtgaaggacaggttctcgattacgacaagctgacgctg
aacatcgaaacagatggttcggtgagcggtgaagatgccgttgcctatgcagctcgcatc
cttcaggaccagctcggtgtgttcgtcaacttcgacgagccgcagaaggaagttcacgag
gaaacggtcgccgaactcgctttcaatccgtcgcttctcaagaaggtcgacgagttggaa
ctttcggtccgctcggcaaactgcctgaagaacgacaacatcgtctatatcggcgacctc
attcagaagaccgaagccgaaatgctccggactccgaactttggccgcaaatcactcaac
gagatcaaggaagtcttggcttccatgggcctgcatctgggtatggaagttccatcctgg
ccgccggaaaacatcgaagatctcgccaagcgttacgaagaccaatattaa
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