Hoeflea sp. IMCC20628: IMCC20628_02236
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Entry
IMCC20628_02236 CDS
T03926
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hoe
Hoeflea sp. IMCC20628
Pathway
hoe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hoe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMCC20628_02236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoe03021
]
IMCC20628_02236
03400 DNA repair and recombination proteins [BR:
hoe03400
]
IMCC20628_02236
Enzymes [BR:
hoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMCC20628_02236
Transcription machinery [BR:
hoe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMCC20628_02236
DNA repair and recombination proteins [BR:
hoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMCC20628_02236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AKI00939
UniProt:
A0A0F7PP61
LinkDB
All DBs
Position
complement(2318251..2322462)
Genome browser
AA seq
1403 aa
AA seq
DB search
MNHEVMNLFNNAVPAQTFDSIRISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTSLKENSLLSEEDYMIAVDEFGEDSFTA
MIGAEAIFELLASMDLERIAGELRTELATTTSELKSKKLMKRLKIVESFIDSGNRPEWMI
MKIVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVAENEPGQGMAFSDMGELHHALE
SKIVTLHTKIRGRFKTIDAEGKPVSKIYETTPGRMIISELLPKNVNVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFGHACRAGISFGKDDMVIPETKAKIVGDTDTL
VKEYEQQYNEGLITQGEKYNKVVDAWGKATEKVADEMMARIKSVEFHENGRQKQMNSIYM
MSHSGARGSPSQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHVDCGTTEGLTMTAIVDAGQVVASIGQRILGRTT
LDDINHPLTGELMVKAGSTIDEAQVVDIEAVGIQSIRIRSPLTCEIQTGICGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHLGGAATVVDQSFLEASYEGTVRIKNRNM
LRNSDGNLIAMGRSMAVQILDEGGTERSSQRVAYGSRIYVDDGDAVKRGQRLAEWDPYTR
PMLTEVEGTVEFEDVVDGISVLEATDEATGITKRQVIDWRSTPRGIDLKPSVVIKGKDGE
VAKLARGGEARFQLSVDAILSVEPGAKVSQGDVLARVPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEVDGTIRFGRDYKNKRRILIEPAEDGMEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEV
TDAGDSVYIVGDNVDQIELDNANDRLVEDGKKPAYGVPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKVDTLQGLKENVIVGRLVPAGTGGTMTLIRRIATARDDLILDERRKT
SGAESAAPMLTKMTSEEEPTPAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatgaggtcatgaatcttttcaacaacgccgtaccggcgcagacgttcgattcc
atccggatttcgatcgccagcccggaaaagattctttcctggtccttcggcgaaatcaaa
aagccggagacgatcaactatcgtacgttcaaacctgaacgcgacggtcttttctgcgcg
cgtatctttggtccgatcaaggactatgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgaaaagtgtggcgtcgaagtcacgctgtcgcgcgtgcgccgt
gagcgcatgggccatatcgagctggctgcccccgttgcccacatctggttcctgaagtcg
ctgccgtcgcgcatcggcacgctgctcgacatgacgctcaaggatatcgagcgcgtcctg
tatttcgagaactacatcgtcaccgagccaggcctgacgtcgctcaaggagaactcgctt
ctctctgaggaagactacatgatcgccgtcgacgagttcggtgaagacagcttcaccgcc
atgatcggcgcggaagccattttcgaactgcttgcttcgatggatcttgagcgcattgcc
ggtgaactacgcaccgagcttgccaccacgacctcggaactcaagtcgaagaagctgatg
aagcgcctcaaaatcgttgagagctttattgattccggcaaccgcccggaatggatgatc
atgaagatcgttccggtgatcccgcccgacctgcgtccgctggtgccgctggatggcggc
cgtttcgcgacgtccgatctgaacgatctctatcgccgggtcatcaaccgcaacaaccgt
ctcaagcgtctgatcgaactgcgcgcacctggcatcatcatccgcaacgaaaagcggatg
ctgcaggaagccgttgatgctctgttcgacaacggccgccgtggccgcaccatcaccggt
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgtttc
cggcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaag
ccgttcatctatgcccgtcttgacgccaagggctattcgtccaccgtcaagcaggccaag
aagctggtcgagaaggaaaagccggaagtctgggatatcctcgatgaggtcatccgcgag
catccggtgctgctcaaccgcgcgccgacgcttcaccgtctgggcatccaggccttcgaa
ccgattctggttgaaggcaaggctatccagctgcatccgctcgtctgcacggcctttaac
gccgacttcgacggtgaccagatggcggtccacgtaccgttgtccctggaagctcagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcaccctgccaacggcgcaccg
atcatcgtgccgtcacaggacatggttctgggactgtactatctctcgattgtcgctgaa
aacgagccgggccagggcatggcattctccgacatgggcgaactgcaccacgcactcgaa
agcaagatcgtcaccctgcacaccaagatcaggggccggttcaagacaattgatgccgaa
ggcaagccggtttcgaagatttatgagaccacaccaggtcgcatgatcatcagcgagctt
ctgcccaagaacgtcaatgtgccgttcgagacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctatcgtcactgcggtcagaaagacacggtcatcttc
tgtgaccgcatcatgcagctcggcttcggtcatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggaaaccaaggcgaaaatcgtcggcgacaccgacaccttg
gtcaaggaatacgagcagcagtacaatgaaggcctcatcacccagggcgaaaagtacaac
aaggtcgttgacgcctggggcaaggctaccgaaaaggtggctgacgaaatgatggcgcgc
attaagtctgtcgagttccatgagaatggccggcagaagcagatgaactcgatctacatg
atgagccattccggcgcgcgtggttctccgagccagatgcgtcagttgggcggcatgcgt
ggcctcatggccaagccgtcgggcgaaatcatcgagacgccgatcatctcgaactttaag
gaaggcctgaccgtgaacgagtacttcaactcgacgcacggcgcacgtaagggccttgcc
gacaccgcgctgaagaccgcgaactccggttacctgacacgtcgtctggttgatgttgca
caggattgcatcgttacccacgtcgattgcggcaccaccgaaggcctgacgatgacagca
atcgtcgacgccggacaggttgttgcctcgatcggtcagcgtatccttggccgcaccacg
cttgatgacatcaatcatccgctgaccggtgagcttatggtcaaggccggctcgacgatt
gatgaagcgcaagtggtagatatcgaagctgtcggcatccagtctatccgcattcgttcg
ccgctgacctgcgaaatccagaccggaatttgcggaacctgctacggacgtgaccttgca
cgcggtacgcctgtcaacatcggtgaagctgtcggcgttatcgccgcgcagtcgatcggt
gagccgggcacgcagcttaccatgcgtaccttccaccttggcggcgccgccaccgtggtc
gaccaatcgttcctggaagcctcttacgagggtacggttcgcatcaagaaccgcaacatg
ttgcgcaactccgatggcaacctgattgccatgggtcgcagcatggcggttcagattctt
gatgaaggtggcaccgagcggtcttcgcagcgtgttgcttatggatcgaggatctatgtg
gacgacggcgatgcggtcaagcgcggtcagcgtctggccgaatgggatccgtatacgcgt
ccgatgttgacggaagtcgaaggcaccgtggaatttgaagatgtcgtcgacggcatctcg
gttctcgaagccacagacgaagcaaccggcatcaccaagcgtcaggttattgactggcgc
tcgacgccgcgcggtatcgatctcaagccttccgtcgtgatcaagggtaaggatggcgaa
gtcgccaaactggctcgcggtggcgaagcccggttccagctgtcggttgacgcgatcttg
tcggtcgaacccggcgccaaggtcagccagggcgatgttctcgcccgtgtgccgctcgaa
agcgccaagaccaaggacatcaccggcggtctgccgcgggtggcggaattgttcgaagct
cgccgtccgaaggatcatgccatcatcgcagaagtcgatggcacaatccgctttggccgc
gattacaagaacaagcgccgcatcctgatcgagccggctgaagatggcatggaaccggtc
gagtacctgattccgaagggcaagcctttccaccttcaggatggcgactacatcgaaaag
ggagactacatcctcgacggcaatcctgcgccgcatgacattctggcaattaagggcgtg
gaggcacttgcgtcctacctcgtcaacgagatccaggaagtctaccgtttgcagggcgtt
ctgatcaacgacaagcacatcgaagtgattgttcgtcagatgctgcagaaggtcgaagtc
actgatgcaggcgattccgtctacatcgttggcgacaatgtcgaccagatcgagcttgat
aacgctaatgatcgtcttgtcgaagatggcaagaagccagcctacggcgtgccggttctg
ctcgggatcaccaaggcatcgctgcagacgccttcgttcatctcggctgcgtcgttccag
gaaaccaccaaggtgctgaccgaagccgcagttgcgggcaaggtcgacacgctgcagggt
ctcaaggaaaacgttatcgtcggacgtctggtgcctgcgggtaccggcggcaccatgacc
ctgatccgtcgtatcgccactgcgcgcgacgatttgatcctggacgaacgccgcaagaca
tctggtgcggaatcggcggcacctatgctgaccaagatgacatcggaagaagagccgacg
ccggccgaataa
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integrated database retrieval system
