Hoeflea sp. IMCC20628: IMCC20628_02397
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Entry
IMCC20628_02397 CDS
T03926
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hoe
Hoeflea sp. IMCC20628
Brite
KEGG Orthology (KO) [BR:
hoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hoe03016
]
IMCC20628_02397
Enzymes [BR:
hoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IMCC20628_02397
Transfer RNA biogenesis [BR:
hoe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IMCC20628_02397
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AKI01095
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Position
2497005..2498156
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AA seq
383 aa
AA seq
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MDMITTTEALAAFCTRLASHDFVTVDTEFLRETTYWPELCLIQMAGPDDEGIVDPQAEGI
DLKPFFDLMADSSVIKVFHAARQDIEIVVKLGDLVPHPIFDTQVAAMVCGFGESISYDQL
VSRITGAPIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLELVSRLEAENRAHWLID
EMAILETRATYEVEPEDAWRRLKMRVKKPAELCVLQHVAAWREREAKARNVPRGRVIKDD
AIYEIAQQQPQDSEALSRLRTIPRGWERSQQGATIVEIVKEALETPKDEMPRLPRQRQAP
EGAQAAVELLRVLLKLTVEKENVAAKIIATSDDLEAIAIDGEAADVGALKGWRRELFGDR
ALKLIRGEVALRFTDKKVEAVEL
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggacatgattacaacgaccgaggcgcttgccgccttttgcacccgccttgccagccac
gactttgtcactgttgacaccgagttcctgcgtgagaccacctattggcccgagctctgc
ctcatccagatggcaggcccggacgacgaaggtatcgtcgacccgcaagctgaagggatt
gatctcaaaccattttttgacctgatggcggattcgtcggtgatcaaggtgtttcacgcc
gcgcgccaggacatcgaaatcgtggtcaagctcggagatctggttccgcacccgattttc
gacacccaggtcgcggccatggtctgcggtttcggcgaatcaatttcctatgatcagctg
gtttcgcggatcaccggcgcaccaatcgacaaatcctcgcgatttaccgactggagccgc
cggccgctcagcgacaagcagctggattacgccctggccgacgtcacccatctgcgcgat
gtctatctcgagcttgtctcccggctggaagccgaaaaccgcgcccattggctgatcgac
gaaatggccatactggaaacgcgcgccacctatgaggtcgagcccgaggacgcctggcgg
cggctgaagatgcgggtcaagaaacccgccgagctgtgcgtgctgcagcatgtggcagcc
tggcgcgaacgcgaagccaaggcccgcaacgtgccgcgcggccgggtgatcaaggacgac
gcgatttacgagatcgcacagcagcagccgcaggacagcgaagctctgtcgcggctgcgg
acaattccgcgcggctgggagcggtcgcaacagggcgccaccatcgtcgagatcgtcaag
gaagcgcttgaaacaccaaaggacgagatgccgcggctgccgcgccagagacaggcgccc
gagggtgctcaggccgcggtggaactgctgcgcgtgctgctcaagctgacggtggaaaaa
gagaatgttgccgccaagatcatcgccacttccgatgaccttgaagccattgccattgac
ggcgaagccgccgatgtcggagcgctgaaaggctggcgccgggaattgttcggcgaccgg
gcgctcaagctcattcgcggcgaagtggcgctcagatttaccgacaagaaggtcgaagcg
gtcgagctttaa
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