KEGG   Hoeflea sp. IMCC20628: IMCC20628_03622
Entry
IMCC20628_03622   CDS       T03926                                 
Name
(GenBank) DEXH box helicase, DNA ligase-associated
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
hoe  Hoeflea sp. IMCC20628
Brite
KEGG Orthology (KO) [BR:hoe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hoe03400]
    IMCC20628_03622
Enzymes [BR:hoe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     IMCC20628_03622
    5.6.2.6  RNA 3'-5' helicase
     IMCC20628_03622
DNA repair and recombination proteins [BR:hoe03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    IMCC20628_03622
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: AKI02308
LinkDB
Position
3796238..3798826
AA seq 862 aa
MTGSACLESDRGCTTLTNVKAESIPDIDNPGFILPEPFLGWFASRGWQPRAHQLELLAET
GNGGSMLLIAPTGAGKTLAGFLPSLTELTTRGKPKPGAAGFRSLHTLYISPLKALAVDIE
RNLARPVEEMGLPVRIETRTGDTPQSKRARQRSDPPDILLTTPEQVSLLIANQHAERLFA
GLRYVIFDELHSLIASKRGHLLSLALARLRKLAPGLRTIGLSATVADPEELQRWLVPQSN
VMDELAGRITVTGGASPVITILESAERIPWSGHSARYAIPDVYKTIKDHRTTLVFVNTRS
QAELLFQELWRINDDSLPIALHHGSLDAAQRRRVEAAMGRNELRAVVATSTLDLGIDWGD
VDLVVHVGAPKGASRLAQRIGRANHRMDEPSRAILTPANRFEVLECQAAIDANYVGAQDT
PSGGDGGLDVLAQHVLGMAAAAPFDADELFAEVTSASPYAWLDRETFDKVIEFVATGGYA
LKSYDRYARIRKRADGLWRISNPQVAQQYRLNIGTIIEAPMLNVRMTSRKNGALSGRGGP
PLGKVEEYFLETLAPGDTFLFSGKILRFEGIRENECLVSKAWDQDPKVPAYAGGKFPLST
YLAEGVRAMIADPDKWGALPDQVSDWLRMQQQVSQLPAKDSLLIETFPRAEPHYMVLYPF
EGRVAHQTLGMLLTRRLERMGAQPLGFVATDYSLAVWGLEDMGAMISNGRLDLGQLFDED
MLGDDLDAWLNESWLLKRTFRACAVISGLIERRHPGKEKTGRQVTVSADLIYDVLRSHEP
DHILLQATRADAAQGLLDIHRLGIMLKRIKGHIRHRPLDRISPLAVPIMLEIGREPVTGE
AHESILAEAAEDLLAEAQPPGS
NT seq 2589 nt   +upstreamnt  +downstreamnt
atgactggctcggcctgcttggagagtgaccgcggctgcactacattgacgaatgtgaaa
gctgaatccatacctgacatcgacaatccgggatttatattgcccgagccgtttctcggc
tggttcgccagccgtggctggcagccgcgcgcgcatcagctggagctgctggcggagact
ggcaatggaggatcaatgctgctgattgcaccgacgggcgcaggcaagacattggccggc
tttctgccgagcctgactgaactcaccacgcgcggcaaacccaaacccggtgctgccggc
ttcagatcgctgcacacgctttacatctcgccgctcaaagcgctggcagtcgacattgag
cgtaacctggcgcggccggtcgaggaaatgggtctgccggtgcggatcgaaacccggacc
ggcgacacgccgcagtccaaacgtgcccggcagcgcagtgatccacccgatattctgctg
accacgccggagcaggtgtccctgttgatcgccaatcaacacgcagagaggctgtttgcc
ggtctgcgctatgtgatctttgatgagctgcattcgctgatcgcctccaaacgcgggcat
ctgctgtcactggcgctggcccgactgcgcaagctggctcccggattgcgcaccattggg
ctgtcggcgacagtggctgatccggaagagctgcagcgctggctggtgccgcaatcaaac
gtcatggacgagcttgccggacgcatcacagtcaccggcggggcgagcccggtgatcacc
attctcgaaagcgccgagcgcattccctggtcgggtcattcggcgcgctacgccattccc
gacgtatacaaaaccatcaaggaccaccgcaccacgctggtcttcgtcaacacccgtagt
caggctgaacttctgtttcaggagttgtggcggatcaatgacgacagcctgccgatcgcc
ctgcatcacggttcgctagatgcggcgcagcggcggcgggtggaagcggcgatgggtcga
aatgagctgcgcgccgttgtcgccacctcgacactggatctggggatcgactggggggat
gtcgatctggtcgtgcatgtcggcgcgcccaagggcgccagccggctggcgcagcggatc
ggtcgcgccaaccaccgcatggacgaaccgagccgggcgatcctgacaccggccaaccgg
tttgaagtgctcgaatgccaggcggcgattgacgccaattatgtcggcgcccaggacacg
ccgtcggggggagatggcggactcgacgtgctggcccagcatgtgctcggcatggcggca
gccgcgccctttgatgcggacgaactctttgcggaagtgaccagcgcctcaccctatgcc
tggctcgaccgcgagaccttcgacaaggtgatcgagtttgtcgccaccggcggctatgcg
ctcaaaagctatgaccgctacgcccggatccgcaagcgcgccgacgggctgtggcggatc
tccaatccgcaggtagcgcagcaataccggctcaatatcggcaccatcatcgaggcgccg
atgctcaatgtgcggatgaccagccgcaagaacggggcgctgtcagggcgcggtggcccg
ccgctgggcaaggtcgaggagtactttctcgaaaccctggcgccgggcgacacgttcctg
ttttcgggaaaaattctcagatttgagggcatccgcgaaaacgaatgcctggtctccaag
gcctgggatcaggatccgaaggtgcctgcctatgccggcggcaaatttccgctgtcgacc
tatctggccgaaggcgtacgcgccatgatcgccgatccggacaaatggggtgcacttccc
gatcaggtgtcggactggctgcggatgcaacagcaggtttcgcaactgccagccaaggac
agcctgctgatcgaaacctttccgcgggccgagccgcactacatggtgctttacccgttt
gaaggccgggtcgcgcaccagacgctgggcatgctgttgacgcggcggctggagcggatg
ggggcgcagccactgggatttgtggcgactgattattcgctggccgtctgggggctggaa
gacatgggcgcgatgatttccaacgggcggctggatctcggccaattgtttgacgaggac
atgctcggcgacgatcttgatgcgtggctgaacgaatcctggctgctcaagcgcaccttc
cgggcttgcgcggtgatctccgggctgatcgagcggcgtcatcccggcaaggaaaaaacc
ggccgccaggtcacggtctctgccgacctgatctacgacgttctcagaagccatgaaccc
gatcatattctgctgcaggcaacccgcgcggatgcggcacaagggcttttggatattcac
cggctcggtattatgctgaagcgaatcaaaggccatatccggcaccggccgcttgatcgg
atctcgccgctggcggttccgatcatgctggaaatcggccgtgaaccggtcaccggcgag
gcgcatgagagcattttggctgaagccgcggaagacctgcttgccgaggcgcaaccccct
gggtcctga

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