Hoeflea sp. IMCC20628: IMCC20628_04161
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Entry
IMCC20628_04161 CDS
T03926
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hoe
Hoeflea sp. IMCC20628
Pathway
hoe03030
DNA replication
hoe03410
Base excision repair
hoe03420
Nucleotide excision repair
hoe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMCC20628_04161
03410 Base excision repair
IMCC20628_04161
03420 Nucleotide excision repair
IMCC20628_04161
03440 Homologous recombination
IMCC20628_04161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hoe03032
]
IMCC20628_04161
03400 DNA repair and recombination proteins [BR:
hoe03400
]
IMCC20628_04161
Enzymes [BR:
hoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IMCC20628_04161
DNA replication proteins [BR:
hoe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMCC20628_04161
DNA repair and recombination proteins [BR:
hoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IMCC20628_04161
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC20628_04161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Transposase_20
HHH_2
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AKI02838
LinkDB
All DBs
Position
4388763..4391717
Genome browser
AA seq
984 aa
AA seq
DB search
MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVAGFCNMLWKLMSETRDTSVGVT
PTHFAVIFDHSSKTFRKDLYPEYKANRSAPPEDLVPQFAVIREATRAFDLPCIEMEGFEA
DDLIATYARLAREAGGDVTVISSDKDLMQLVGPQVSMYDSMKDRQIGVQEVIDKWGVPPE
KMIDLQALTGDSVDNVPGIPGIGPKTAAQLIGEFGDLDTLLERAGEIKQNKRRENIIEFA
DKARLSRELVRLRDDVDITEKLDEFVLNPLDGPKLVAFLKGMEFTSLTRRVADATDTDAS
VVDATDVAVGAAAEMRGPDLDPGQSASTGGDGSSVGNGKSDDTPQALAKRRMDAAMSAKI
DTSAYETLSDIVQLKAWCAMARERGLVAFDTETTSLDAMQAELVGFSLALPENAPESGAL
KVKACYVPLAHSNGIGDLLGGGGAQAGQMPMRAALDELKALLEDPSVLKIGQNLKYDMLV
MAQHAISIESFDDTMLLSYVLDAGQGGHGMDPLAERWLGHKTISYKDVTGSGKSAIPFAE
VQIDKATAYAAEDAEVTLRLWHVLKPRLVSDGLATVYERLERPLAPVLMRMEKHGIRVDR
QILSRLSGELAQGAAALEAEIQELAGENFNVGSPKQLGEILFDKMSLPGGSKTKTGQWST
SAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPQTQRVHTSFAMAATTTGR
LSSSDPNIQNIPVRTAEGRKIRTAFIAEPGNVLISADYSQIELRVLAHVANIPQLTQAFA
DGVDIHAMTASEMFGVPIEGMPSDVRRRAKAINFGIIYGISAFGLANQLSISRSEAGDYI
RKYFERFPGIKDYMDAAKAEAKEFGYVTTIFGRRAHYPEIRSSNPQVRAFNERAAINAPI
QGSAADVIRRAMVRMEPALEKAGANARMLLQVHDELIFEAPEADAEKIIPLIVEVMENAA
MPAVDMAVPLKVDARAALNWDEAH
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggtgatcatctctttctcgttgacggctctggttatattttccgggcctat
cacgctcttccacccctgacgcggaaatccgacggcctgccggtcggcgctgtcgccggt
ttctgcaacatgctgtggaagctcatgtcggagacgcgagatacgtccgttggcgtgaca
ccgacgcattttgcggtgattttcgaccattcctcgaagacctttcgcaaggatctttat
ccggagtacaaggctaaccgttcggccccgccggaagatctggttccccagtttgcggtc
attcgcgaggcaacgcgggcttttgatctgccctgcatcgagatggaaggctttgaggcc
gacgatctgatcgcgacttacgcgcggctggcgcgggaagccggcggcgatgtcacggtg
atctcgtcggacaaggatctgatgcagttggtcgggccgcaggtgtcgatgtatgacagc
atgaaggatcgccagatcggagtgcaggaagtcatcgacaaatggggtgtgccgcccgaa
aaaatgatcgacctgcaggcgctgaccggtgattcggtcgacaatgttcccggtatcccc
gggatcggtccgaaaaccgcagcacaactgatcggcgagttcggtgacctcgacacgctg
ctggaacgcgccggcgagatcaaacagaacaagcgccgcgagaacattatcgagtttgcg
gacaaggcgcggctttcccgcgagcttgtaagactcagggatgatgtcgacatcactgaa
aagctcgatgaatttgtcctcaatccgctcgacggacccaagctggtggcctttctcaag
ggcatggaattcacatcgctgacccggcgggtggccgacgccaccgacaccgacgccagc
gtcgtcgacgcgacggacgttgctgttggtgcggcagccgagatgcgcggacccgatctc
gatcctggccagtctgcttcgactggtggcgatggctcttcggtcggaaacggcaaaagc
gacgacacaccgcaagcactggccaagcggcgcatggacgctgccatgtcggccaagatc
gacaccagtgcttatgaaacgctgagcgacatcgtccagctcaaggcctggtgtgcgatg
gcacgtgagcgcggtctcgttgccttcgacaccgaaaccacttcgcttgatgcgatgcag
gcggaactggtcggcttttcactcgccctccctgaaaacgccccggaatccggtgctctg
aaggtgaaagcctgttacgtgccgctggcccattccaacggcatcggcgacctgctgggg
ggtggcggggcgcaagccgggcaaatgccgatgcgcgcggcgctggatgaactcaaggca
ctgcttgaggatccatcggttctgaaaataggtcagaacctgaaatacgacatgctggtg
atggcacagcacgcgatttccatcgagagttttgatgacaccatgctgttgtcctatgtg
ctggacgccggacagggcggccacggcatggatccgctggccgaacgctggctcggccac
aagaccatcagctacaaggatgtcaccgggtcgggcaaaagcgcaatcccgtttgccgag
gtgcagatcgacaaggcgacagcctatgctgccgaagacgccgaggtgacgctgcggctt
tggcatgtgctcaaacctcggctggtgtccgatggactggcgacggtctatgagcggctc
gagcgtccgctggcgccggtgctgatgcggatggaaaagcacggaatccgtgttgaccgg
cagatcctgtcgcggctgtcgggcgaactggcccagggcgcggcggcgctggaagcggaa
atccaggaacttgccggggaaaatttcaatgtcggctcgcccaaacagctcggcgaaatt
ctgtttgacaagatgagcctgccgggcgggtcgaaaaccaagaccgggcaatggtcgaca
tcggcccaggcactcgaggatctcgcagccgccggccatgaactgccgcgcaagatcgtc
gactggcggcagctgaccaagctcaaatccacctataccgacgcgctgccgggattcatc
aaccctcagacccagcgggtgcacacctctttcgccatggcggccaccaccaccgggcgg
ctatcctcgtcagatccgaacattcagaacattccggtgcgcaccgccgaaggccgcaag
atccgcaccgccttcatcgccgagcccggcaacgtgctgatttcggccgattacagccag
atcgaacttcgggtgctggcgcatgttgccaatattccgcagctgacccaggcttttgcc
gatggcgtcgacattcacgccatgactgcatcagaaatgttcggcgttccgattgagggc
atgccgtccgatgtgcgccgccgcgccaaggcgatcaatttcggcatcatctatggcatt
tctgcctttggcctggccaatcagctcagcatctcgcggtcggaagccggcgattatatc
cgcaaatatttcgaacgcttcccgggcatcaaggattacatggacgccgccaaggcggag
gccaaggagtttggctatgtgaccaccatctttggccgccgggcgcattatccggaaatc
cgctcttccaatccgcaggtgcgcgccttcaatgaacgcgccgccatcaacgcgccaatc
cagggctctgccgccgatgtcatccgccgcgccatggtgcgaatggaaccggcactcgaa
aaagccggcgccaacgcccggatgctgttgcaggtgcatgacgaactgattttcgaagcg
cccgaagcagacgccgaaaagatcattccgctgatcgtcgaagtgatggaaaacgccgcc
atgccggctgtcgatatggcggtgccgctgaaggtcgatgcacgtgcggcgttgaactgg
gatgaggcgcattag
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