KEGG   Hoeflea sp. IMCC20628: IMCC20628_04230
Entry
IMCC20628_04230   CDS       T03926                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
hoe  Hoeflea sp. IMCC20628
Pathway
hoe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hoe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IMCC20628_04230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hoe03021]
    IMCC20628_04230
   03019 Messenger RNA biogenesis [BR:hoe03019]
    IMCC20628_04230
Transcription machinery [BR:hoe03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     IMCC20628_04230
Messenger RNA biogenesis [BR:hoe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     IMCC20628_04230
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 NACHT S1CSD-TOTE-2 DUF6360 AAA
Other DBs
NCBI-ProteinID: AKI02907
LinkDB
Position
4469090..4470355
AA seq 421 aa
MQEMKLQELKNKSATDLLAFAESVEVENASVLRKQELMFAILKQLAAQDVEIIGEGVVEL
LQDGFGFMRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFEDPEKIRHKVHFDNLTPLYPDERFKMEVENPTTKDISARVIDLVAPIGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPS
MDILKSGTRKEDLLVPKQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaggaaatgaagcttcaagagctcaagaacaagtccgctaccgatctgttggcgttt
gccgaatcagtcgaagtcgagaacgccagtgtcttgcgcaagcaggaactgatgtttgcg
atcctcaaacagctcgcggcacaggatgtcgagattattggtgagggtgtcgtcgaactg
ctgcaggatggttttggcttcatgcggtcagccaatgccaactatctgcctggcccggat
gatatctacatttcgccatcgcaaatccgtcgcttctcgttgaagaccggcgataccgtc
gaaggtccgattcgcggacccaaggaaggcgagcgctatttcgctctgctcaaggtcaat
acgatcaatttcgaggatcctgaaaagatccgccacaaggtgcatttcgacaatctgaca
ccgctatatccagatgagcggttcaagatggaggtcgagaatccgacgaccaaggacata
tccgcacgggtgatcgatctggtagcgccgatcggcaagggccagcgtggcctgattgtt
gcgccgccccgcaccggtaaaaccgtgctgttgcagaatatcgcccactcgatcaccgca
aatcatcccgattgctatctgatcgtgctgttgattgatgaacggcctgaggaagtcacc
gacatgcagcgctcggtcaagggcgaagtggtggcatcgaccttcgatgaacccgctgtt
cgtcacgtccaggtagccgagatggtgatcgagaaggcaaagcgtctggttgaacacggt
cgggatgtggtcattctgctcgattcaatcacccgtcttggccgtgcctacaacaccgtc
gtgccgtcatcaggcaaggttttgaccggtggtgtggatgccaacgccctgcagcgtccg
aagcgcttttttggtgctgcgcgtaacatcgaggaaggtggctcgctgactatcatcgcc
accgccttgattgataccggatcgcggatggatgaagtgatctttgaggagttcaagggc
accggtaactcggaaatcgttcttgaccgcaaagttgcagacaagagaattttcccgtca
atggatattctcaagtccggcacccgcaaggaagaccttctggttccaaagcaggatctg
cagaagatctttgttctgcgccgtattctggcaccgatgggaacaaccgatgcgatcgag
ttcctgatcgacaaactcaagcagaccaagaccaacagcgactttttcgattcaatgaat
acctga

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