Haliangium ochraceum: Hoch_0025
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Entry
Hoch_0025 CDS
T01103
Name
(GenBank) UvrD/Rep helicase family protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03420
Nucleotide excision repair
hoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hoch_0025
03430 Mismatch repair
Hoch_0025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_0025
Enzymes [BR:
hoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hoch_0025
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hoch_0025
MMR (mismatch excision repair)
Other MMR factors
Hoch_0025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C_2
UvrD_C
UvrD-helicase
AAA_19
AAA_12
ResIII
DEAD
SLFN-g3_helicase
NACHT
AAA_11
nSTAND3
T2SSE
NPHP3_N
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACY12667
UniProt:
D0LFN3
LinkDB
All DBs
Position
complement(35385..37943)
Genome browser
AA seq
852 aa
AA seq
DB search
MSKPVQPSTPGAEIVAEEERLHGRVQARVAMGQEDIVDRVGTDEFDEELIRLRDMIAEAK
PEDLPPLVEQMTRLAAIRSRLGGSRSLPADPASPYFAHMVLSENGRRRDVLVGKRGFIDR
KHNVQIVDWRNAPVSRIYYRYDEGDDYEEEIAGRPTQGMVEVRRNVSIIHSKLRRIGAPQ
GTFVRDSHEVWHEAVGEAMPVLRGGQGKAVRVPRALKPESRDAQDDKGGRGKGKGRGKGG
RGQPRAAQRATLGVHGDDLHRADKSLPEIAALIDGEQFDLITQPESGMVVIQGGAGSGKT
TVALHRIAYLNFADRSRFRPQNILFVVPSASLARYVAGVLPALGVSGVAALTYERWARDL
RIRLLRGSSGKYNHDTPEAVSRVKKHPALLGVLDRYVAAQAASFGDEILAAAREAGDRRA
AEILQQAWAERAELPLAVRLAKLGGWLRSRDARLPSPVRQAAESAVKRLRRRAGDVLADW
SELMSDPRALGEGFAGWDDLSAADLRRTVEWCAQQAAGPVELAVNPDGQPIDAIDGRAIE
EDGPGGRFDLEDDPILLRLIQLKRGRLLGAGGAEVSYEHVAIDEAQDRSAIEVKVLIEAT
RAHEDSRGRPQRSITIAGDTAQRLVFDNSFHGWQSLLDNTGQAAVVRPLRLSYRSTAEVM
YFAREVLGPELAPDEPLVARSGEPVELHMFGDIGEAVAFLADALRALVGREPSASVAVLA
RHSEQADAYYAGLMRAEVPSLRRVRNHDFRFVPGVDVTDVTQVKGLEFDYVIMVDVNASS
YPSNVESRHLLHIGATRAAHQLWLISTSTPSNLLPEELRERGSLGAPPPADADDNDGGGT
GDEADAETAASS
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagccagtgcagccatcgacgccaggtgccgagatcgtcgccgaggaagagcgt
ctccacggccgcgtgcaagcgcgcgtggccatgggtcaagaggacatcgtcgaccgggtc
ggcaccgacgaattcgacgaggagctgatccgcctgcgcgacatgatcgccgaggccaag
cccgaggatctgccgcccctggtcgagcagatgacgcgtctggccgccatccgcagccga
ttgggcggctcgcgcagcctgccggcggatcccgcctcgccgtacttcgcgcacatggtg
ctgagcgaaaacggccgccgtcgcgacgtgctggtgggcaagcgcggcttcatcgaccgc
aagcacaacgtccagatcgtcgactggcgcaacgcgccggtgtcgcgcatctactaccgc
tacgacgagggcgacgactacgaggaggagatcgccgggcgccccacccagggcatggtc
gaggtgcgccgcaacgtctccatcatccacagcaagctgcgccgcatcggcgcgccccag
ggcaccttcgtccgcgatagccacgaggtctggcacgaggccgtgggcgaggccatgccg
gtgctgcgcggcggccagggcaaggccgtgcgcgtgccccgcgcgctcaagcccgagagc
cgcgacgcccaggacgacaagggcggcagaggcaaaggtaagggccgaggcaaaggcggg
cgcggacagccgcgcgccgcgcagcgcgccacgctcggcgtccacggcgatgacctgcac
cgcgcggacaagtcgctgcccgaaatcgcagccctgatcgacggcgagcagttcgacctc
atcacccagcccgagagcggcatggtggtcatccagggcggcgccggctcgggcaagacc
acggtcgccctgcaccgcatcgcctacctcaacttcgccgatcgctcgcgcttccggccg
cagaacatcctgttcgtggtgccctcggcgtcgctggccaggtacgtggccggcgtgctg
cccgcgctgggcgtgagcggggtcgccgcgctcacctacgagcgctgggcccgcgatctg
cgcatccgcctgctgcgcggcagcagcggcaagtacaaccacgacacgcccgaggcggtg
tcgcgggtcaagaagcatcccgctctgctgggcgtgctcgaccgctacgtcgccgcccag
gccgcgagctttggcgacgagatcctcgcagccgcgcgcgaggccggcgaccggcgcgcc
gccgagatcctccagcaggcctgggccgagcgcgccgagctgccgctggccgtgcgcctg
gccaagctcggcggctggctgcgctcgcgcgacgcgcgcctgccgtcgccggtgcgccag
gcggccgagagcgcggtcaagcgtctgcgccgccgcgccggcgacgtgctcgccgactgg
tccgagctgatgagcgacccgcgcgcgctgggcgagggctttgccggctgggacgacctg
agcgcggccgacctgcggcgcacggtcgagtggtgcgcgcagcaagcggccgggccggtg
gagctggccgtcaaccccgatggtcagcccatcgacgccatcgacggccgcgccatcgag
gaggacggccccggcggacgcttcgacctcgaggacgatcccatcctgctgcggctcatc
cagctcaagcgcggccgcctgctcggcgccggcggggccgaggtgagctacgagcacgtg
gccatcgacgaggcccaggaccgctcggccatcgaggtcaaagtcctcatcgaagccacg
cgcgcgcacgaggactcccgcggccgcccccagcgctcgatcaccatcgccggcgacacc
gcccagcgcctcgtgttcgacaacagcttccacggctggcagtcgctgctcgacaacacc
ggccaggccgccgtggtccgcccgctgcggctctcgtatcgctccacggccgaggtcatg
tacttcgcgcgcgaggtgctcggccccgagctggcacccgacgagccgctggtcgcgcgc
tcgggcgagccggtcgagctgcacatgttcggcgacatcggcgaggccgtggcgttcctc
gccgacgccttgcgtgcgctggtcggccgcgagccgagcgcgtccgtcgccgtgctggcg
cgccactccgagcaggccgacgcctactacgccggcctgatgcgcgccgaggtgccgtcg
ctgcgccgggtgcgcaaccacgacttccgcttcgtgcccggcgtcgacgtcaccgacgtc
acccaggtcaaaggtctcgagttcgactacgtgatcatggtcgacgtgaacgccagcagc
tacccgagcaacgtcgagtcgcgccacctgctgcacatcggcgccacccgcgccgcgcat
cagctctggctgatctcgaccagcacgccctcgaacctgcttcccgaggagctgcgcgag
cgcggcagcctgggcgcgccgcccccggccgacgccgatgacaacgacggcggcggcacc
ggcgacgaagccgacgccgagacggccgcgagcagctag
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