Haliangium ochraceum: Hoch_0328
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Entry
Hoch_0328 CDS
T01103
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hoch_0328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoh03019
]
Hoch_0328
Enzymes [BR:
hoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hoch_0328
Messenger RNA biogenesis [BR:
hoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hoch_0328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACY12969
UniProt:
D0LIU0
LinkDB
All DBs
Position
complement(465474..466967)
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AA seq
497 aa
AA seq
DB search
MPFQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPIL
QRLAETGDGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGRHLPLRNTVIFGGVNQN
RQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDEADRMLDMGFIHDIRKIVAA
VPSERQTLLFSATMPGEIQSLAAGLLQEPVKVSVTPESTAAETVEQCVYLVSREDKQSLL
TELLRDDPEMAKVLVFSRTKHGADRVAKRLSKSNIPAQAIHGNKSQNARLRALESFKRGD
TRVLVASDIAARGLDIDALSHVVNFDLPNEPETYVHRIGRTGRAGCEGVAMSFCADEERG
YLRSIERLIDQLIPVIEDHPFPAGFDKLPVEQPRPQRANHGGPPGRSRRSGGGRRGPGGG
PGAGTGNGRRGPGGGSRPRRGGGGGGGGGGGGGGGGGGGGGESPSRSRRGSGSGRRSGDA
RPADTGGRSRSRTRSRS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgccatttcaacaactcggtctctccgagccgctcgtgcgcgccgtacacgacgccggc
tacaccaacgctacccccatccaaacccaggccatcccccccgcgctcgacggccgcgac
ctgctcggttgcgcccagaccggcacgggcaagacggcggccttctccctgcccatcctc
cagcgtctggccgaaaccggcgacggcaacgcccgtccgcgccgcggcgcgcggcccatt
cgcgctctcatcgtcacccccacccgcgagctcgccgcccagatcggcgacagcatgacc
acctacggccggcacttgccgctgcgcaacaccgtcatcttcggcggcgtgaaccagaac
cgccaggtggacgcgctccggcgcgggatcgacatcctggtggccacgcccggccgcctg
ctcgacctcatggaccagggctacatccacctggatcggctcgaggtgttcgtgctcgac
gaggccgaccgcatgctcgacatggggttcatccacgatatccgcaagatcgtcgccgcg
gtgccgagcgagcgccagacgctgctgttttcggccaccatgccgggcgaaattcagtcg
ctggccgcgggtctgttgcaggagccggtcaaggtgtcggtgacgccggagtcgaccgcg
gccgagaccgtggagcagtgcgtgtacctggtgtcccgcgaggacaagcagtcgctgctc
accgagctgctgcgcgatgaccccgagatggccaaggtgctggtgttctcgcgcaccaag
cacggcgccgaccgcgtcgccaagcggctgtcgaagtccaacatcccggcccaggcgatc
cacggcaacaagtcgcagaacgcccgtctgcgggcgctcgagagcttcaagcggggcgac
acccgggtgctggtggcctcggatatcgccgcccgcggcctcgatatcgacgcgctctcg
cacgtggtcaacttcgatctgcccaacgagcccgagacctacgtgcaccgcatcgggcgc
accggtcgcgccggctgcgagggcgtcgcgatgtcgttctgcgccgatgaggagcgcggc
tacctgcgcagcatcgaacgcctgatcgaccagctcatccccgtgatcgaggaccatccc
ttccccgccggcttcgacaagctgccggttgagcagccgcggccgcagcgcgccaatcac
ggcggacctccggggcgcagccggcgctcgggcggcggtcgccgcggccccggtggcggt
cctggcgccggcaccggcaacggtcgccgcggccccggtggcggctcgcgtccgcgccgc
ggcggcggcggcggcggtggtggcggtggtggcggcggcggcggcggcggcggcggcggc
ggcgagtcgccctcgcgctcgcgccgcggttccggtagcggacggcgcagcggcgacgcg
cgcccggccgacaccggcggacgctcgcgctcgcgcacccgctctcgctcctga
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