Haliangium ochraceum: Hoch_2539
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Entry
Hoch_2539 CDS
T01103
Name
(GenBank) Uracil-DNA glycosylase superfamily
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hoch_2539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_2539
Enzymes [BR:
hoh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Hoch_2539
DNA repair and recombination proteins [BR:
hoh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Hoch_2539
Prokaryotic type
Hoch_2539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ACY15074
UniProt:
D0LKM6
LinkDB
All DBs
Position
complement(3507609..3508250)
Genome browser
AA seq
213 aa
AA seq
DB search
MTPTANPPAQRATQRALRTHIDALRLCRLCPDMHAPPIPGPPVVSPLMLLGQAPGRHEGR
VGRPFGWKAGKTLFTWFAGIGLPEEALRQRVYIAAVCRCFPGPHPSGGGDRVPKRAEIER
CHGWLAREIELLRPRLIIPIGKLAIAQLMPVRKLSEVVGGCHRIAFAGHTLDAIPLPHPS
GISTWHRRPPGSLLLAEALERIAAHAAFNRLLR
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgactcccacagcaaacccaccggcgcagcgcgcgacccagcgcgcactgcgcacacac
atcgacgccctccgcctgtgccgcctgtgtcccgatatgcacgcgccgccgatcccgggc
ccgcccgtggtctcgccgctcatgctcctgggccaggcacccggccgtcacgagggccgc
gttggacgccctttcggctggaaggcgggcaagaccctgttcacctggttcgccggcatc
ggcctgcccgaggaggcgctgcgccagcgcgtgtacatcgcggccgtgtgccgctgcttc
cccggtccgcacccgagcggcggcggtgaccgcgtccccaaacgcgccgagatcgagcgc
tgtcacggctggctcgcgcgcgagatcgagctcttgcgaccgcgcctcatcatcccgatc
ggcaagctggccatcgcccagctcatgccggtgcgcaagctgagcgaggtggtgggcgga
tgtcaccgcatcgcgttcgccggacacacgctcgacgccatccccctgccccatccctcc
ggcatctcgacctggcatcggcgcccgccgggctcgctgctgctggccgaagcgctcgag
cgcatcgccgcgcacgcagccttcaacaggctgctaaggtaa
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